Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_L01
         (288 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   1.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   1.7  
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    21   3.0  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    21   3.0  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    21   3.0  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.0  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    20   5.3  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     19   9.2  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 234 ESTNLDSTCASIAFGSSDSGSKARA 160
           +S N   TC   A  S+  GS++R+
Sbjct: 199 KSENETKTCKKYAISSNSLGSRSRS 223


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 1.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 8    GVLGIVKDCVDD 43
            G   I+KDCV+D
Sbjct: 1302 GATSIIKDCVED 1313


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 29  DCVDDDVYMCLKEKVLKYAETLRSKREITLID 124
           DC DD  Y CLK      +     K    LID
Sbjct: 90  DC-DDKFYDCLKNSADTISSYFVGKMYFNLID 120


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 29  DCVDDDVYMCLKEKVLKYAETLRSKREITLID 124
           DC DD  Y CLK      +     K    LID
Sbjct: 95  DC-DDKFYDCLKNSADTISSYFVGKMYFNLID 125


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 29  DCVDDDVYMCLKEKVLKYAETLRSKREITLID 124
           DC DD  Y CLK      +     K    LID
Sbjct: 95  DC-DDKFYDCLKNSADTISSYFVGKMYFNLID 125


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 15  WALLRTVSTMTCI 53
           WAL + +S M CI
Sbjct: 328 WALFKAMSHMLCI 340


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 15  WALLRTVSTMTCI 53
           WAL + +S M CI
Sbjct: 296 WALFKAMSHMLCI 308


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 20.2 bits (40), Expect = 5.3
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = +2

Query: 86  ETLRSKREITLIDGVTLESKGS 151
           + +R+ R+ + +DGVTL +  S
Sbjct: 145 QLIRNLRQSSALDGVTLLADNS 166


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 19.4 bits (38), Expect = 9.2
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = -3

Query: 28  LNNAQNALV 2
           +NN+QNALV
Sbjct: 340 INNSQNALV 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,144
Number of Sequences: 438
Number of extensions: 1208
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5744526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)