Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K24
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.09 |taf4||transcription factor TFIID complex subunit Ta... 30 0.13
SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog |Schi... 27 1.2
SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 27 1.2
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 2.8
SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import com... 25 2.8
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 25 4.9
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 25 4.9
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc... 25 4.9
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 24 8.5
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 24 8.5
>SPAC23G3.09 |taf4||transcription factor TFIID complex subunit
Taf4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 29.9 bits (64), Expect = 0.13
Identities = 15/45 (33%), Positives = 27/45 (60%)
Frame = +2
Query: 17 NTFTVSPCQSHISQKHGTQRLKQNIHAVISWLSVKHYLVRTLKQM 151
N+F + S+I H + + +IHA+IS ++V+ YL L++M
Sbjct: 127 NSFVLMQTVSNIVNLHRLKSMDSDIHALIS-MAVRDYLANLLQKM 170
>SPBC19G7.17 ||SPBC36B7.01|translocon subunit Sec61 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 26.6 bits (56), Expect = 1.2
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 295 GSGPVHLIGHHLLGALV 345
GSGPV L+G H+LG ++
Sbjct: 178 GSGPVLLLGSHILGNIM 194
>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 578
Score = 26.6 bits (56), Expect = 1.2
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +1
Query: 55 SETWDPEAKAEYPRSN----KLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 222
SE + A +P +N + + LL K + N ++ +++K + VL+
Sbjct: 265 SEGFHHRASRYWPITNLDSFSTISEKELLNYSKKQELTNFIENSIRKKIQTIKNLIPVLQ 324
Query: 223 AGETRHARLDFEFPDA 270
+ HAR+DF+ D+
Sbjct: 325 EMDKEHARIDFDNVDS 340
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.4 bits (53), Expect = 2.8
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Frame = +1
Query: 154 LNVVQVETMSLQESVKIPVA---VLKAGETRHARLDFEFPDAPVIFTLIQGSG 303
LN +Q T+SL+ S++I V+ H R++ F + + L++G+G
Sbjct: 556 LNEIQKSTLSLK-SLQIGTILQEVMTMAREHHVRIEANFANTVLSILLVEGAG 607
>SPBP23A10.16 |sdh4|tim18|TIM22 inner membrane protein import
complex anchor subunit Tim18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 186
Score = 25.4 bits (53), Expect = 2.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +3
Query: 267 CTCHIHSYTGFRTCSFDWSPS 329
CT H++ GF +C D+ P+
Sbjct: 121 CTLITHAHLGFESCVIDYFPA 141
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 24.6 bits (51), Expect = 4.9
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +1
Query: 55 SETW--DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQV 171
SE W + AE KL+ Q L+G DAK D L ++ V
Sbjct: 540 SENWVYSEQQLAEVRNMEKLLDAQ-LMGGDAKVDRLRLLMV 579
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +1
Query: 256 EFPDAPVIFTLIQGSGPVHLIGHHLL 333
EFPD P F ++ + P + H L+
Sbjct: 38 EFPDGPATFVRLKCTNPESKVPHFLM 63
>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 4.9
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Frame = -3
Query: 287 RVNMTGASGNSKSKRACLVSPAFNTAT---GIFTDSC 186
++N A NSK+K++ ++ TAT G DSC
Sbjct: 695 KLNKAAAVENSKAKKSVVIKKVSGTATLNLGNVKDSC 731
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 269 HLSYSLLYRVQDLFI*LV 322
HL YSL YR Q L++ L+
Sbjct: 169 HLLYSLAYRAQWLYLILI 186
>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 269 HLSYSLLYRVQDLFI*LV 322
HL YSL YR Q L++ L+
Sbjct: 169 HLLYSLAYRAQWLYLILI 186
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.134 0.388
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,461,278
Number of Sequences: 5004
Number of extensions: 24856
Number of successful extensions: 65
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -