Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K24
         (367 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0915 + 22556522-22556536,22557719-22558177,22559796-225602...    28   2.6  
07_03_0914 + 22554314-22554328,22554586-22555065                       28   2.6  
08_02_1094 + 24275719-24277029                                         27   6.0  
12_01_0431 + 3396661-3397283,3399679-3399775                           26   7.9  
03_01_0018 - 157657-158487                                             26   7.9  

>07_03_0915 +
           22556522-22556536,22557719-22558177,22559796-22560254,
           22561869-22562348
          Length = 470

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 192
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 192
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 253 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 287



 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 192
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 406 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 440


>07_03_0914 + 22554314-22554328,22554586-22555065
          Length = 164

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 88  YPRSNKLVIRQALLGPDAKADELNVVQVETMSLQE 192
           Y RSN LV+R    G   K  E  ++ VET ++ E
Sbjct: 100 YHRSNSLVLRAGRRGRAEKVGEFTMLFVETPNMSE 134


>08_02_1094 + 24275719-24277029
          Length = 436

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +1

Query: 289 IQGSGPVHLIGHHLLGALVEEC 354
           ++G  P H IG HL G +V  C
Sbjct: 74  LEGFVPAHFIGWHLRGEIVRGC 95


>12_01_0431 + 3396661-3397283,3399679-3399775
          Length = 239

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +3

Query: 162 CSGGDNVITGVGKNTSRSI 218
           CSGGD VI+ V K   RSI
Sbjct: 200 CSGGDGVISTVEKEWRRSI 218


>03_01_0018 - 157657-158487
          Length = 276

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 229 ETRHARLDFEFPDAPVIFTLIQGSGPVHL 315
           + + AR+  EFP   V F + +GS PV+L
Sbjct: 161 DVQFARVPCEFPGLKVGFHVEEGSSPVYL 189


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,883,171
Number of Sequences: 37544
Number of extensions: 175719
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)