Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K24
         (367 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical ...    29   0.77 
AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical ...    29   0.77 
AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical ...    29   0.77 
AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical ...    29   0.77 
U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical pr...    27   3.1  
U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily as...    27   4.1  
Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical p...    27   5.4  
U80452-8|AAB37855.1|  244|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical p...    26   9.5  
Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical pr...    26   9.5  
AF025462-8|AAB71004.1|  121|Caenorhabditis elegans Hypothetical ...    26   9.5  

>AF016421-6|AAT92074.1|  984|Caenorhabditis elegans Hypothetical
           protein F44E7.4d protein.
          Length = 984

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALVEE 351
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+ E
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSE 371


>AF016421-5|AAO12429.1| 1008|Caenorhabditis elegans Hypothetical
           protein F44E7.4c protein.
          Length = 1008

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALVEE 351
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+ E
Sbjct: 265 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSE 312


>AF016421-4|AAC25789.1| 1067|Caenorhabditis elegans Hypothetical
           protein F44E7.4a protein.
          Length = 1067

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALVEE 351
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+ E
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSE 371


>AF016421-3|AAM45374.1| 1051|Caenorhabditis elegans Hypothetical
           protein F44E7.4b protein.
          Length = 1051

 Score = 29.5 bits (63), Expect = 0.77
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALVEE 351
           + V+   +TR   + F FPD    F    G    HLIGH   G+L+ E
Sbjct: 324 IDVVPIKDTRLVSISFPFPDLNGEFLSQPGHYISHLIGHEGPGSLLSE 371


>U23180-3|AAC46729.2|  856|Caenorhabditis elegans Hypothetical
           protein C28F5.4 protein.
          Length = 856

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +1

Query: 208 VAVLKAGETRHARLDFEFPDAPVIFTLIQGSGPVHLIGHHLLGALVEE 351
           + ++    T    + F FPD    F    G    HLIGH   G+L+ E
Sbjct: 266 IEIVPIQNTGQVSIKFPFPDLNGEFLSQPGDYIAHLIGHEGPGSLLSE 313


>Z82266-1|CAB05178.2|  626|Caenorhabditis elegans Hypothetical
           protein F23B2.3 protein.
          Length = 626

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = -2

Query: 348 FNQCTKQMVTNQMNRS*TLYKSEYDRCIGELKVQACMSCLSCFQYCDWYFYR 193
           F +CT     N +N S +L   E     G+++ Q   SC  C Q CD   YR
Sbjct: 394 FQECTPFETYNCVNNSLSLLNEE----TGKMEFQP-PSCTRCGQQCDSQVYR 440


>U80442-5|AAB37668.2|  794|Caenorhabditis elegans Hypothetical
           protein T20F5.6 protein.
          Length = 794

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 67  DPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQ 189
           + EA A   R+ K +   ALL PDA  D  N   ++ + +Q
Sbjct: 690 EAEANANGQRAPKNIEMPALLNPDANPDAPNFKNLQPLQVQ 730


>U40797-15|AAB37553.2| 1004|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 77 protein.
          Length = 1004

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +2

Query: 8   GRTNTFTVSPCQSH-ISQKHGTQRLKQNIHAVISWLSVKHYLVRTLKQMSLM 160
           G  +T   SP   +    +   QRLK+  +A + +L V++  V+ LK+M+++
Sbjct: 326 GEDSTDGASPVPDYETGDEKDDQRLKKLHYAAVEFLKVQNNYVQYLKEMAVL 377


>Z71262-12|CAA95808.1|  545|Caenorhabditis elegans Hypothetical
           protein F22D6.3a protein.
          Length = 545

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 15/61 (24%), Positives = 30/61 (49%)
 Frame = +1

Query: 43  ESHQSETWDPEAKAEYPRSNKLVIRQALLGPDAKADELNVVQVETMSLQESVKIPVAVLK 222
           +S + E+W+P AKA   ++ K    +      A   E    + +  +L+E+ KI  ++ K
Sbjct: 44  KSEEGESWEPAAKAAIKKAVKKYEAEVKKLEKAGCREKEAEEAQHAALEEAKKITFSLDK 103

Query: 223 A 225
           +
Sbjct: 104 S 104


>U80452-8|AAB37855.1|  244|Caenorhabditis elegans Hypothetical
           protein C16C8.13 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = +2

Query: 5   EGRTNTFTVSPCQSHISQKHGTQRLKQN-----IHAVISWLSVKHYLVRTLKQMSLMLFR 169
           E + +  T+  CQ  + ++HG Q+ ++N      H ++   SVK       KQ    + +
Sbjct: 33  EDKLHKNTLEMCQKILKKQHGFQKTQENQNKFIEHLILDLESVKKETSDMKKQQETQILK 92

Query: 170 WRQCHYRSR*KYQSQ 214
            RQ  Y    K + Q
Sbjct: 93  -RQDEYHDEMKQEFQ 106


>Z98877-16|CAH60800.1|  975|Caenorhabditis elegans Hypothetical
           protein Y69H2.10b protein.
          Length = 975

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = -3

Query: 260 NSKSKRACLVSPAFNTATG--IFTDSCND 180
           N   KRAC+ +P F    G  +  DSC D
Sbjct: 826 NKSCKRACICAPGFVKENGKCVTLDSCPD 854


>Z81479-11|CAB03937.2| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 196 PTPVMTLSPPEQ 161
           PTPVMTL PP Q
Sbjct: 331 PTPVMTLPPPPQ 342


>Z73423-8|CAO82012.1| 1441|Caenorhabditis elegans Hypothetical
           protein C34F6.10 protein.
          Length = 1441

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/12 (83%), Positives = 10/12 (83%)
 Frame = -1

Query: 196 PTPVMTLSPPEQ 161
           PTPVMTL PP Q
Sbjct: 331 PTPVMTLPPPPQ 342


>AF025462-8|AAB71004.1|  121|Caenorhabditis elegans Hypothetical
           protein K10F12.6 protein.
          Length = 121

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 8/28 (28%), Positives = 20/28 (71%)
 Frame = +2

Query: 68  TQRLKQNIHAVISWLSVKHYLVRTLKQM 151
           T  +++++ + ++WL  + Y+ R+LKQ+
Sbjct: 55  TSTMRRSLESRLAWLGRQSYVFRSLKQL 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,309,501
Number of Sequences: 27780
Number of extensions: 151369
Number of successful extensions: 410
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)