Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K23
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    26   0.95 
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   1.7  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    24   2.9  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    24   3.8  
SPBC32H8.08c |||mannosyltransferase complex subunit |Schizosacch...    23   6.7  
SPAC12B10.03 |||WD repeat protein, human WDR20 family|Schizosacc...    23   6.7  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    23   8.9  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    23   8.9  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   8.9  

>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.8 bits (54), Expect = 0.95
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 240 RSLKIAKYRCEKLHENQLANIFLTTETNRK 151
           R+LKIA+YR  +  E +L  +   +ETN +
Sbjct: 120 RTLKIARYRMRQNLEKELKALSKDSETNEE 149


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -2

Query: 175 FDNGNKSEIYLIEIKC--VYLYENNRLLI 95
           F N +   + + ++ C  VY YENNRL +
Sbjct: 21  FVNASSWNVIVAKVNCLEVYSYENNRLCL 49


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 36   FRISTQKKSNNHR 74
            F + TQK SNNHR
Sbjct: 1916 FALKTQKDSNNHR 1928


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 234 LKIAKYRCEKLHENQLANIFLTTE 163
           L +A+YR EK HEN L +  L  E
Sbjct: 280 LYLAQYRPEKNHENVLRSFALYFE 303


>SPBC32H8.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 438

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = +1

Query: 10  RNKIGFFLDLGFQH 51
           R+++ +F DLG+QH
Sbjct: 381 RSQVHYFRDLGYQH 394


>SPAC12B10.03 |||WD repeat protein, human WDR20
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 117 YKYTHLISIR*ISDLFPLSKKYLLIDFHVTF 209
           Y+Y  L+S R    LF   K+++L  FH  F
Sbjct: 334 YQYLALVSERGTLKLFDFVKEHVLDVFHSYF 364


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 219 YRCEKLHENQLANI 178
           Y CEK+HE  +A+I
Sbjct: 359 YDCEKIHEIDVADI 372


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 124  YLYENNRLLIYYKVTQIL*LLLFFC 50
            YL+ ++ L+I +  + IL L L FC
Sbjct: 1019 YLFSHSFLVIIFACSVILNLSLMFC 1043


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -2

Query: 163 NKSEIYLIEIKCVYLYENNRLLIYYK 86
           NK+ +Y++  K +  +  NR   +YK
Sbjct: 764 NKNSVYMVTSKNIVYFTTNRGKNFYK 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 967,692
Number of Sequences: 5004
Number of extensions: 16224
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)