Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K23
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0406 + 3197189-3197389,3197491-3197628,3198463-3198544,319...    27   1.6  
03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    27   2.7  

>05_01_0406 +
           3197189-3197389,3197491-3197628,3198463-3198544,
           3198658-3198734,3198829-3198935,3199367-3199505,
           3200602-3200718,3200850-3200941,3201096-3201162,
           3201249-3201355,3201468-3201546,3201751-3201894,
           3202095-3202235
          Length = 496

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -2

Query: 121 LYENNRLLIYYKVTQIL*LLLFFCVEILNLKKILFCF 11
           LY  + +L+   V+  L LLL++ V+++N+KK    F
Sbjct: 379 LYTVSYMLLTGGVSGFLLLLLYYIVDVINIKKPFILF 415


>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -2

Query: 142 IEIKCVYLYENNRLLIYYKVTQIL*LLLFFCVEILNLKKI 23
           I +KC+  Y    LL+Y     I+ L++   V ++NL+ I
Sbjct: 555 IAMKCMDRYGRRSLLLYTIPMLIVSLIILIVVNVMNLEAI 594


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,953,289
Number of Sequences: 37544
Number of extensions: 71773
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)