Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K22
         (396 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    24   0.73 
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      24   0.73 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   3.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   3.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +1

Query: 313 LRRGLGYHHVH-MMTAAMIVVTEGI 384
           LRR LGYH  H  + +A+IVV   I
Sbjct: 209 LRRRLGYHLFHTYIPSALIVVMSWI 233


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
 Frame = -1

Query: 357 SGHHMDVVVPETAAE--DHGRHNLVHH*TSLRERGVHILYVHLNLGWRPQRHEDLQILQK 184
           S H MD+  P    +   +  H+ +HH   L ++  +++Y + +   R Q H + +IL++
Sbjct: 52  STHLMDLSSPPEHRDLPIYQSHHHLHHHQVLYQQSPYLMYENPDEEKRYQEHPNGKILRE 111

Query: 183 RNRVDFWPPIH-----FSKDHSK 130
             + D+   +H     F  DHS+
Sbjct: 112 L-QTDYDRRLHDNSPSFLSDHSR 133


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 1.7
 Identities = 7/23 (30%), Positives = 11/23 (47%)
 Frame = -1

Query: 105 CWRCFPNRQHRFCSRHSAT*CLN 37
           CW CF   Q++       T C++
Sbjct: 606 CWHCFNCTQYQIRDHKDVTQCIS 628


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 2.2
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -1

Query: 387 HNALCHHNHSSGHHMDVVVPETAAED 310
           H A     H   H  D+VV   AA+D
Sbjct: 203 HAAFISMRHRGAHITDIVVLVVAADD 228


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 2.9
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -1

Query: 156  IHFSKDHSKKMHLQVL 109
            + FSK+  K+ HLQ++
Sbjct: 1030 VDFSKEDGKEHHLQIM 1045


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 8/23 (34%), Positives = 10/23 (43%)
 Frame = +2

Query: 224 HPRFRWTYNMWTPRSRRDV*WWT 292
           HP     +N W P  R  +  WT
Sbjct: 466 HPYDHLVWNSWMPSIRGAIQQWT 488



 Score = 21.0 bits (42), Expect = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 293 RLWRPWSSAAVSGTTT 340
           +L+  W S   SGTTT
Sbjct: 444 KLFEQWKSILESGTTT 459


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 45  IMSRYGDCKIYVGDLGNNASKPELEDAF 128
           I +RY D    V    N A+ PEL + F
Sbjct: 332 IRTRYKDSSSSVEGWENRATIPELNEEF 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,194
Number of Sequences: 438
Number of extensions: 2116
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9761793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)