Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K21
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein S17|S... 146 7e-37
SPBC839.05c |rps1701|rps17-1|40S ribosomal protein S17|Schizosac... 144 3e-36
SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1 |Sc... 29 0.18
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 29 0.23
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 28 0.41
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 1.2
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 26 1.6
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 25 2.9
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 25 3.8
SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr ... 25 3.8
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 25 5.0
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 25 5.0
SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar... 25 5.0
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom... 25 5.0
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 25 5.0
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 24 6.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 24 6.7
SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomy... 24 6.7
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 24 6.7
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 24 8.8
SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces pom... 24 8.8
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 24 8.8
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 24 8.8
>SPCC24B10.09 |rps1702|rps17-2, rps17|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 3|||Manual
Length = 132
Score = 146 bits (355), Expect = 7e-37
Identities = 72/114 (63%), Positives = 82/114 (71%)
Frame = +1
Query: 10 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 189
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 190 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNI 351
+ VRGIS KLQEEERER+D YVPEVS LE+D I VD DT DMLK L + +I
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSI 114
>SPBC839.05c |rps1701|rps17-1|40S ribosomal protein
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 131
Score = 144 bits (350), Expect = 3e-36
Identities = 71/114 (62%), Positives = 80/114 (70%)
Frame = +1
Query: 10 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 189
MGRVRT YY RLTLDF TNKRI +E+AII +K LRNKIAG+TTHLM+R
Sbjct: 1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKR 60
Query: 190 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNI 351
+ VRGIS KLQEEERER+D YVPEVS LE D + VD DT DMLK L + I
Sbjct: 61 IQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114
>SPAC1F3.10c |oct1||mitochondrial intermediate peptidase Oct1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 762
Score = 29.5 bits (63), Expect = 0.18
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -1
Query: 225 LNRDSSHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE 91
+NR +L + + ++ G FV + LS+ND NF+ P +G E
Sbjct: 228 MNRPQRYLTI--SKQRLAGSDPYFV-RSLSKNDKNFIMIPTVGYE 269
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 29.1 bits (62), Expect = 0.23
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 12/57 (21%)
Frame = +1
Query: 232 EEERERRDNYV------PEVSALEQDIIE------VDSDTNDMLKMLDFSNINGLQL 366
EEE+ER NY+ P +S +E +++ +++ + M+D SN GLQL
Sbjct: 265 EEEKERSKNYLFTKIASPLLSVVEDELLSKHLDDLLENQSTGFFSMIDSSNFEGLQL 321
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 28.3 bits (60), Expect = 0.41
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Frame = -1
Query: 210 SHLGVYETSHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIE----VKSKPSVVFF 61
SH+ + +T+ + G P V KR+ D N L + IE +KS P VV +
Sbjct: 37 SHVYLVQTNSKTDGSPITAVLKRMYSPDENALRFVKTEIETMELLKSNPHVVSY 90
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 26.6 bits (56), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 199 SQVRGISIKLQEEERERRDNYVPEV 273
S V ISIK QEEER+R+ E+
Sbjct: 351 SHVDSISIKAQEEERKRQAEIEKEI 375
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 184 RRLIHSQVRGISIKLQEEERERRDNYVPEVS 276
R+ S+ R S KL EEER+RR +V +++
Sbjct: 218 RKRSRSRPRERSSKLSEEERDRRTVFVSQLA 248
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.4 bits (53), Expect = 2.9
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -1
Query: 189 TSHQMGGEPSNFVAKRLSRNDSN 121
TS MGG PS F LSRN N
Sbjct: 455 TSSIMGGNPSLFNGSVLSRNSVN 477
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.0 bits (52), Expect = 3.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -3
Query: 289 PVLEQILLGHNCHAF 245
P+LEQ+L G+NC F
Sbjct: 142 PMLEQVLNGYNCTIF 156
>SPCC1450.03 |||ribonucleoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 169 TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTND 321
+ HLM ++ + + QEE R+RR ++ E E++ +D D ++
Sbjct: 99 SAHLMTKIFSLSGKLNMVLSQEEMRQRRLDFSSEDGEEEEENDYIDEDVDE 149
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 24.6 bits (51), Expect = 5.0
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 357 TINVTEVKH-LQHIIGVRIDFNDILF*SRYFWDIIVTPFTLLFLKLNRDSSHLGVYETSH 181
T +V+H L+ ++ + I+ + +YF I TP +L + +DS+ L YE+S
Sbjct: 461 TYKYIKVRHRLKALLVLSIENTENPEKRKYFEINIETPVRILSCRCVKDSTLLPPYESSS 520
Query: 180 Q 178
Q
Sbjct: 521 Q 521
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/44 (31%), Positives = 26/44 (59%)
Frame = +1
Query: 223 KLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNIN 354
K E+++E DNY ALE ++ +++ ++LK DF++ N
Sbjct: 845 KFIEKDQESIDNYEQNREALESEVATAEAEL-ELLKE-DFASEN 886
>SPAC17G8.05 |med20||mediator complex subunit
Med20|Schizosaccharomyces pombe|chr 1|||Manual
Length = 180
Score = 24.6 bits (51), Expect = 5.0
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -1
Query: 255 VTPFTLLFLKLNRDSSHLGVYETSHQMGGEP 163
VTP TL FLK N + S L + + + EP
Sbjct: 35 VTPKTLEFLKQNINPSMLACVDEATMIDAEP 65
>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 24.6 bits (51), Expect = 5.0
Identities = 18/73 (24%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Frame = +1
Query: 145 LRNKIAGF----TTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 312
+R +IA F H ++R S+ ++ + E +R Y+P +S Q+ +EV ++
Sbjct: 372 IREQIASFMLDIADHNVKRYGKSEESSSTMNVGEGLLKRTKKYIPILSRQRQESVEVVNE 431
Query: 313 TNDMLKMLDFSNI 351
K L S++
Sbjct: 432 RYKRKKGLKDSDV 444
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 74 LGLLLTSIPIKGYVRKLLSFLLSLFATKLL 163
+GLL TS I R L ++LFAT LL
Sbjct: 94 VGLLYTSASIYQMTRGSLIIFVALFATTLL 123
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 24.2 bits (50), Expect = 6.7
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +1
Query: 154 KIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYV 264
KIA FT ++ I G+S+KLQE+E +R + V
Sbjct: 352 KIASFTDIMVCLCIG----GLSLKLQEQELRKRPDIV 384
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = +2
Query: 113 VRKLLSFLLSLFATKLLGSPPI**DVSYTPRCEESLLSFKK 235
VR LL FL+ + ++G+P VSY P + + F+K
Sbjct: 161 VRPLLRFLIEFWLNGVVGTPED--FVSYLPSTDSNDKKFRK 199
>SPCC1442.06 |||20S proteasome component alpha 2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +1
Query: 118 EIAIIPTKPLRNKIAGFTTHLMRRLIHSQVR 210
EIA++ TKP + I G RL S++R
Sbjct: 209 EIAVVSTKPTDSGIVGVPGGHFCRLSQSEIR 239
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.2 bits (50), Expect = 6.7
Identities = 9/31 (29%), Positives = 18/31 (58%)
Frame = +1
Query: 232 EEERERRDNYVPEVSALEQDIIEVDSDTNDM 324
E+ +N E++ L + I+E++S ND+
Sbjct: 452 EKRANESNNLQREIADLSEQIVELESKRNDL 482
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 23.8 bits (49), Expect = 8.8
Identities = 14/55 (25%), Positives = 26/55 (47%)
Frame = +1
Query: 190 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNIN 354
L+H Q+R + KL E+R+ + +E + + + + L+FSN N
Sbjct: 885 LLHDQIRITNAKL-----EKREKLINASKYIEDTLRSEIQEAAEKVSNLEFSNFN 934
>SPBC27B12.07 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 290
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/41 (24%), Positives = 23/41 (56%)
Frame = +1
Query: 181 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEV 303
+ +L+H Q+ ++ + + E R+++ EV L I+E+
Sbjct: 169 LEQLVHEQLNKLNTESKMEFENRKNDTKNEVQQLSARIVEL 209
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 23.8 bits (49), Expect = 8.8
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 193 IHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNIN 354
IH+Q + +L EE + P +S + VDS + + + DF +++
Sbjct: 463 IHAQPNAVYCRLMEEVGMTSKSISPSLSGISAPSASVDSSASRLAR--DFGSLS 514
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 364 VADH*CY*SQASSTYHWCPNRLQ*YP 287
VA H Y Q+ ++YH C N +P
Sbjct: 109 VASHPSYMVQSPTSYHACSNNQSPFP 134
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,476,285
Number of Sequences: 5004
Number of extensions: 28084
Number of successful extensions: 114
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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