Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K21
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0174 + 13815478-13815903 138 1e-33
03_01_0066 - 537729-538163 136 5e-33
02_04_0449 + 23010099-23010317,23010873-23010934,23011399-230114... 29 0.88
06_01_0829 - 6254769-6254852,6254940-6255024,6255158-6255245,625... 29 1.5
05_04_0273 + 19632430-19632762,19633109-19633177,19633318-196333... 29 1.5
12_02_0534 - 20103908-20105897,20106314-20107116 27 6.2
08_02_0545 + 18470313-18470669,18470901-18471095,18471183-184713... 27 6.2
07_01_0358 - 2631214-2632992 27 6.2
05_07_0360 + 29542854-29542900,29542988-29543129,29543207-295445... 27 6.2
07_01_0578 + 4295386-4296489,4297394-4297507 26 8.2
06_03_1207 + 28418473-28421073 26 8.2
05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417... 26 8.2
04_03_0517 + 16712487-16712570,16713715-16714059,16714149-167143... 26 8.2
02_04_0512 + 23565210-23566058,23566824-23568224 26 8.2
>10_07_0174 + 13815478-13815903
Length = 141
Score = 138 bits (334), Expect = 1e-33
Identities = 66/121 (54%), Positives = 87/121 (71%)
Frame = +1
Query: 10 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 189
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGFTTHLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFTTHLMRR 60
Query: 190 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNINGLQLT 369
+ VRGIS+KLQEEERERR ++VPE SALE + I VD +T +ML L +++ G++
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPEKSALEVEEIRVDKETMEMLAALGMADLPGVERQ 120
Query: 370 Q 372
Q
Sbjct: 121 Q 121
>03_01_0066 - 537729-538163
Length = 144
Score = 136 bits (329), Expect = 5e-33
Identities = 65/117 (55%), Positives = 85/117 (72%)
Frame = +1
Query: 10 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 189
MGRVRT YY+R+TLDF TNK++ EE++I+P+K LRNK+AGF+THLMRR
Sbjct: 1 MGRVRTKTVKKTSRQVIEKYYSRMTLDFHTNKKVLEEVSILPSKRLRNKVAGFSTHLMRR 60
Query: 190 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNINGL 360
+ VRGIS+KLQEEERERR ++VP+ SALE D I VD +T DML L +++ G+
Sbjct: 61 IQRGPVRGISLKLQEEERERRMDFVPDRSALEVDDIRVDKETLDMLTSLGMADLPGV 117
>02_04_0449 +
23010099-23010317,23010873-23010934,23011399-23011450,
23011803-23011917,23012024-23012118,23012852-23012958,
23013042-23013156,23014159-23014203,23014324-23014392
Length = 292
Score = 29.5 bits (63), Expect = 0.88
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = -2
Query: 344 LKSSIFNISLVSESTSMISCSRADT 270
+K+ +F+I LVSE S+I+C A T
Sbjct: 158 VKNKVFSIDLVSEDPSVIACDMAHT 182
>06_01_0829 -
6254769-6254852,6254940-6255024,6255158-6255245,
6255344-6255407,6255496-6255576,6256709-6256781,
6256871-6257385,6258168-6258284
Length = 368
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/33 (30%), Positives = 21/33 (63%)
Frame = +1
Query: 226 LQEEERERRDNYVPEVSALEQDIIEVDSDTNDM 324
+ E E +R +++PE + ++++I E D D N +
Sbjct: 26 VSERESQRHPSHLPEATEVQENIYEDDDDDNSV 58
>05_04_0273 +
19632430-19632762,19633109-19633177,19633318-19633374,
19633534-19633597,19633887-19634102,19634761-19634803,
19635267-19635345,19635467-19635559
Length = 317
Score = 28.7 bits (61), Expect = 1.5
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = -1
Query: 228 KLNRDSSHLGVYET----SHQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 61
+LNRD + L V++ S Q +P+N K SNF + +G+ +P V
Sbjct: 127 RLNRDVAKLEVFKKTLMQSLQEDEDPANTTPKARVSETSNFSSATSVGVPRPPRPHVFLP 186
Query: 60 DYN 52
YN
Sbjct: 187 SYN 189
>12_02_0534 - 20103908-20105897,20106314-20107116
Length = 930
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 202 QVRGISIKLQEEER---ERRDNYVPEVSALEQDIIEVDSDTNDMLK 330
Q+ G+ + ++ + ERRD Y+ + +A +++VDS M +
Sbjct: 111 QIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYR 156
>08_02_0545 +
18470313-18470669,18470901-18471095,18471183-18471362,
18471462-18471656,18472081-18472179,18472271-18472780,
18472896-18473225
Length = 621
Score = 26.6 bits (56), Expect = 6.2
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Frame = +1
Query: 82 TLDFDTNKRICEEIAIIP---TKPLRN--KIAGFTTHLMRR-LIHSQVRGISIKLQEEER 243
++ D KR+ +EI + +K + N K A ++ R IH QV+ I + + E +R
Sbjct: 196 SISLDEEKRLVKEIKQLNGTRSKVIENAAKRAKMQDTVVERGTIHDQVKQIGVGIDEVKR 255
Query: 244 ERRDNYVPEVSALEQDIIEVDSD 312
+R+ ++ LE I VD +
Sbjct: 256 DRQ-AVRDKIKVLEDQIHAVDGE 277
>07_01_0358 - 2631214-2632992
Length = 592
Score = 26.6 bits (56), Expect = 6.2
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 145 LRNKIAGFTTHLMRRLIHSQVRGISIKLQE-EERERRDNYVPEVSALEQDIIEVDSDT 315
LRN + F +M H + I L E ER RR+ Y+P S + DI E + +T
Sbjct: 465 LRNSVYEF---VMGDRSHPESEQIYEMLAEIAERLRREGYIPRTSNVLADIEEEEKET 519
>05_07_0360 +
29542854-29542900,29542988-29543129,29543207-29544529,
29544642-29544715,29545850-29545964,29546682-29546714
Length = 577
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 169 TTHLMRRLIHSQVRGISIKLQEEERERRDN 258
+T MRRLIH Q+R S ++++E D+
Sbjct: 207 STSNMRRLIHQQIRRSSSSESDKKKEDADD 236
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 26.2 bits (55), Expect = 8.2
Identities = 19/68 (27%), Positives = 27/68 (39%)
Frame = +1
Query: 133 PTKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSD 312
PTK R HL R + S + S+ R R VPE+ + D E
Sbjct: 108 PTKTWRKWHRRVNVHLRRVAVASALAATSVPSLVLARGHRIETVPELPLVISDSAESIEK 167
Query: 313 TNDMLKML 336
T+ +K+L
Sbjct: 168 TSQAIKIL 175
>06_03_1207 + 28418473-28421073
Length = 866
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 221 IEIPRTWECMRRLIKWVVNPAILLRRGLV 135
IE+ TW+ + R++K +NP + L+
Sbjct: 679 IELDITWQLLERMVKHGLNPTVTTYSSLI 707
>05_07_0173 +
28140484-28140869,28141079-28141481,28141719-28141781,
28142350-28142535,28144695-28145076,28145689-28145780,
28145988-28146737,28146969-28147100,28147149-28147247,
28147977-28148132,28150187-28150317,28150798-28151254,
28151327-28151668,28152137-28153001,28153112-28153170,
28153806-28154261,28154835-28154873,28155016-28155201
Length = 1727
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +1
Query: 175 HLMRRLIHSQVRGISIKLQEEERERRDNYVPE 270
HL+ ++HS V +S++L E ++R+ N+ E
Sbjct: 564 HLVDVILHSSVGDLSMELVNEIKDRQRNFDTE 595
>04_03_0517 +
16712487-16712570,16713715-16714059,16714149-16714301,
16714889-16714972,16715426-16715479,16715552-16715647,
16716163-16716258,16716941-16717086,16717650-16717799,
16717889-16718018,16718128-16718787,16718881-16718979,
16719058-16719210,16719323-16720054,16720338-16720640
Length = 1094
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +1
Query: 214 ISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDML 327
I +K +EE E NY+ E L+++I ++ S + ML
Sbjct: 767 IELKRLQEELELCRNYIDEKEVLQEEIQDLKSHLHFML 804
>02_04_0512 + 23565210-23566058,23566824-23568224
Length = 749
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +1
Query: 166 FTTHLMRRLIHSQVRGISIKLQEEERERRDN 258
F +M R +H+ RG S+++ E ERR +
Sbjct: 198 FRLEMMSRAVHAAARGGSVEMLRELIERRSD 228
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,115,784
Number of Sequences: 37544
Number of extensions: 164123
Number of successful extensions: 457
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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