Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K21
(372 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal pr... 137 2e-33
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 31 0.35
AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical ... 30 0.61
Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical pr... 29 0.80
U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical pr... 29 1.4
U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical pr... 29 1.4
U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical pr... 27 4.3
AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory car... 27 4.3
AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synapt... 27 4.3
Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical pr... 26 7.5
AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math ... 26 7.5
Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical pr... 26 9.9
Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical p... 26 9.9
Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical pr... 26 9.9
>AF000263-14|AAG00017.2| 130|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 17 protein.
Length = 130
Score = 137 bits (332), Expect = 2e-33
Identities = 67/115 (58%), Positives = 82/115 (71%), Gaps = 3/115 (2%)
Frame = +1
Query: 10 MGRVRTXXXXXXXXXXXXXYYTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGFTTHLMRR 189
M RVRT YYTR+T DF NKR+C+E+AII +KPLRNKIAG+ THLMRR
Sbjct: 1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGYITHLMRR 60
Query: 190 LIHSQVRGISIKLQEEERERRDNYVPEVSALEQD---IIEVDSDTNDMLKMLDFS 345
+ VRGISIKLQEEERERRDNY+PE+S ++ I+VD+DT+DMLK F+
Sbjct: 61 IERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGFN 115
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 30.7 bits (66), Expect = 0.35
Identities = 15/59 (25%), Positives = 31/59 (52%)
Frame = +1
Query: 181 MRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQDIIEVDSDTNDMLKMLDFSNING 357
+R L +V ++ ++ EE+ R +++ QDI + D+ +ML+ + +N NG
Sbjct: 214 IRELNEQRVDFLNAEVALEEKRRNSRIQDMITSAVQDITDKDTKLEEMLRAMPDTNSNG 272
>AF026202-2|AAB71242.2| 501|Caenorhabditis elegans Hypothetical
protein C10E2.2 protein.
Length = 501
Score = 29.9 bits (64), Expect = 0.61
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 163 GFTTHLMRRLIHSQVRGISIKLQEEERE 246
GFT L RLI +++R + ++EEE E
Sbjct: 471 GFTNELSERLIRAEIRAVEDNVEEEEFE 498
>Z35637-3|CAA84689.1| 244|Caenorhabditis elegans Hypothetical
protein C03C10.4 protein.
Length = 244
Score = 29.5 bits (63), Expect = 0.80
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +1
Query: 178 LMRRLIHSQVRGISIKLQEEERERRDNYVPEVSALEQ 288
++ R ++SQ+ +SI L+ E +ER+D+Y + ALEQ
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALEQ 218
>U39654-3|AAA80406.1| 490|Caenorhabditis elegans Hypothetical
protein C56G3.1a protein.
Length = 490
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 159 NFVAKRLSRNDSNFLTYPFIGI 94
N+ + +S N SN+LTYPF G+
Sbjct: 8 NYCDRGISPNASNYLTYPFDGL 29
>U39654-2|AAM51505.1| 510|Caenorhabditis elegans Hypothetical
protein C56G3.1b protein.
Length = 510
Score = 28.7 bits (61), Expect = 1.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 159 NFVAKRLSRNDSNFLTYPFIGI 94
N+ + +S N SN+LTYPF G+
Sbjct: 28 NYCDRGISPNASNYLTYPFDGL 49
>U40798-9|AAY86274.1| 226|Caenorhabditis elegans Hypothetical
protein R13A1.10 protein.
Length = 226
Score = 27.1 bits (57), Expect = 4.3
Identities = 20/94 (21%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Frame = -1
Query: 360 QTINVTEVKHLQHIIGVR-IDFNDILF*SRYFWDIIVTPFTLLFLKLNRDSSHLGVYETS 184
+ +NV KH + IGV I+F S W + + P L + + D + ++
Sbjct: 51 ECLNVENFKHFRSAIGVEIIEFES----SLPMWLVHLNPKHLRSITVYTDEVKSSIADSL 106
Query: 183 HQMGGEPSNFVAKRLSRNDSNFLTYPFIGIEVKS 82
++ + ++ ++ ND +T IE++S
Sbjct: 107 KKLKNLTTLYILRKTDLNDDVLMTTNATDIEIES 140
>AF225921-1|AAF36687.1| 335|Caenorhabditis elegans secretory
carrier membrane protein protein.
Length = 335
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 136 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 252
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>AF003739-8|AAK84628.1| 335|Caenorhabditis elegans Scamp (synaptic
vesicle protein)homolog protein 1 protein.
Length = 335
Score = 27.1 bits (57), Expect = 4.3
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 136 TKPLRNKIAGFTTHLMRRLIHSQVRGISIKLQEEERERR 252
T L NK AG L R+ + R ++++EEE +RR
Sbjct: 57 TGSLGNKSAGMDDELFRKQQDLERRAQELRMREEELDRR 95
>Z93391-2|CAB07681.1| 490|Caenorhabditis elegans Hypothetical
protein W04G5.4 protein.
Length = 490
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 261 IIVTPFTLLFLKLNRDSSHLGVYET 187
II TP T ++ RDS+ G Y T
Sbjct: 282 IIFTPLTNAIFRIRRDSNEAGPYST 306
>AC006648-9|AAF39858.2| 306|Caenorhabditis elegans Btb and math
domain containingprotein 3 protein.
Length = 306
Score = 26.2 bits (55), Expect = 7.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 197 TPRCEESLLSFKKRSVKGVTIMSQKYLL*N 286
T +CEE L+ F ++ +K +++KY L N
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLEN 264
>Z81139-7|CAI46624.1| 358|Caenorhabditis elegans Hypothetical
protein W05H5.5 protein.
Length = 358
Score = 25.8 bits (54), Expect = 9.9
Identities = 10/18 (55%), Positives = 16/18 (88%)
Frame = +1
Query: 313 TNDMLKMLDFSNINGLQL 366
T+D+ KML+ +N+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124
>Z35663-11|CAA84732.2| 791|Caenorhabditis elegans Hypothetical
protein T04A8.13 protein.
Length = 791
Score = 25.8 bits (54), Expect = 9.9
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 156 FVAKRLSRNDSNFLTYPFIGIEVKSKPSVVFF 61
FV +SR SN L YP + V S+P +F
Sbjct: 445 FVMDDVSRRTSNLLRYPDLHWRVFSRPGKRYF 476
>Z35639-1|CAA84693.1| 1792|Caenorhabditis elegans Hypothetical
protein D2045.2 protein.
Length = 1792
Score = 25.8 bits (54), Expect = 9.9
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +2
Query: 185 DVSYTPRCEESLLSFKKRSVKGVTIMSQK 271
DV RC +++L F RS++ + ++ +K
Sbjct: 155 DVEIIARCFQAILVFSARSIEDIKVLVEK 183
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,029,117
Number of Sequences: 27780
Number of extensions: 150785
Number of successful extensions: 505
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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