Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K18
         (257 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos...    24   2.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    23   8.9  
SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces pomb...    23   8.9  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    23   8.9  
SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    23   8.9  

>SPAC212.04c |||S. pombe specific DUF999 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 288

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +2

Query: 92  ADVTSQLPTLSFMLYFGCTTFYSVYIILFSFYRTSIKLMVSGD 220
           A +   +  +  +LYFG    Y + I+ F F     K++ SGD
Sbjct: 211 ATIAGVIAAMVGILYFGHWLVYKILILAFGF-----KIVTSGD 248


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 125 FMLYFGCTTFYSVYIILFSFYRTSIKLMVSG 217
           F+  F C  F+     LF FY     L +SG
Sbjct: 283 FLARFFCLIFFPFLFFLFWFYMHFNILTISG 313


>SPCC4G3.16 |||CMP/dCMP deaminase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 405

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 256 AFILLTSFISN*IATYHELYASSIK 182
           A ILL+ F+ N +A+  +LY   I+
Sbjct: 109 AGILLSPFVGNYVASDKQLYLKKIR 133


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 77  SLD*HADVTSQLPTLSFMLYFGCTT 151
           SLD    ++S LPT  + +YF   T
Sbjct: 78  SLDTDISISSDLPTDGWQIYFNGAT 102


>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 72  PSHWINTPT*RHNYPRFH 125
           P+ W  TPT ++  P FH
Sbjct: 71  PTTWDFTPTNKYQEPSFH 88


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 834,943
Number of Sequences: 5004
Number of extensions: 11283
Number of successful extensions: 21
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)