Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K18
         (257 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1243 - 25527523-25527960,25527993-25528604                       27   1.6  
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133...    25   8.4  

>08_02_1243 - 25527523-25527960,25527993-25528604
          Length = 349

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
 Frame = +2

Query: 32  YRACLLVSVRYARALSLD*HADVTSQLPT-----LSFMLYFGC 145
           +R+C L   R    LSL   A++ + LPT      +F+LY GC
Sbjct: 30  FRSCFLDRFRRRICLSLGCTANILASLPTREGWWTAFVLYHGC 72


>05_05_0059 +
           22011168-22011662,22012668-22012894,22013029-22013377,
           22013464-22013508,22013589-22013735,22013851-22013988,
           22014126-22014159,22014258-22014430
          Length = 535

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 116 TLSFMLYFGCTTFYSVY 166
           TL+ +LYF  T FY+ Y
Sbjct: 511 TLTAVLYFSATVFYNTY 527


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,895,723
Number of Sequences: 37544
Number of extensions: 58169
Number of successful extensions: 88
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)