Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K17
(306 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa... 142 1e-35
SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein S26|Sc... 136 7e-34
SPCC126.15c |sec65||signal recognition particle subunit Sec65 |S... 29 0.20
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 25 2.5
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 3.3
SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr... 24 4.4
SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc... 24 4.4
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce... 24 5.8
SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr... 24 5.8
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 23 7.7
>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 119
Score = 142 bits (343), Expect = 1e-35
Identities = 62/87 (71%), Positives = 75/87 (86%)
Frame = +3
Query: 45 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFT 224
MT+KRRN GR KHGRGHVK VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASV++
Sbjct: 1 MTQKRRNNGRNKHGRGHVKFVRCINCSRAVPKDKAIKRWTIRNMVETAAIRDLSEASVYS 60
Query: 225 SFQLPKLYAKLHYCVSCAIHSKVVRNR 305
+ +PKLY KL YCVSCAIHS+VVR R
Sbjct: 61 EYTIPKLYIKLQYCVSCAIHSRVVRVR 87
>SPAC806.03c |rps2601|rps26-1, rps26|40S ribosomal protein
S26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 120
Score = 136 bits (329), Expect = 7e-34
Identities = 59/87 (67%), Positives = 74/87 (85%)
Frame = +3
Query: 45 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFT 224
MT+KRRN GR KHGRGH K VRC NC+R VPKDKAIK++ IRN+VE AA+RD++EASV++
Sbjct: 1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYS 60
Query: 225 SFQLPKLYAKLHYCVSCAIHSKVVRNR 305
+ +PK+Y KL YCVSCAIH++VVR R
Sbjct: 61 EYAIPKIYVKLQYCVSCAIHARVVRVR 87
>SPCC126.15c |sec65||signal recognition particle subunit Sec65
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 199
Score = 28.7 bits (61), Expect = 0.20
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +3
Query: 126 RCVPKDKAIKKFVIRNIVEAAAVRDI 203
RCVPKDKAI + +NI A VRD+
Sbjct: 20 RCVPKDKAILNPLAKNI--ADVVRDL 43
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 25.0 bits (52), Expect = 2.5
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 173 YC*SCRCEGHKRSLSFYFIPTSQAVCKTPLL 265
+C +C H+ F+P Q CK LL
Sbjct: 213 FCDNCNTSVHQNCYGIPFVPEGQWFCKKCLL 243
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 3.3
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -1
Query: 297 APLCYGSRMTRSSGVLHTAWEVGMK*KLRLRL 202
+P+ G +MT S + T ++ G + LRL
Sbjct: 954 SPMSQGDKMTSSESTVSTTYDFGFEAAYNLRL 985
>SPBC1347.07 |rex2||RNA exonuclease|Schizosaccharomyces pombe|chr
2|||Manual
Length = 180
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 150 IKKFVIRNIVEAAAVRDINEASVFTSFQLPKLYAKLHY 263
IKK++ + A ++ F S ++PK+ LHY
Sbjct: 93 IKKYIPKKREALIAGNSVHADVRFLSVEMPKIIEHLHY 130
>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 24.2 bits (50), Expect = 4.4
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +3
Query: 21 EDDSEVRNMTRKRRNGGRAKHG 86
+D R R RR GRAKHG
Sbjct: 372 QDRGYDREARRMRRRQGRAKHG 393
>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1242
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +2
Query: 164 DQEYC*SCRCEGHKRSLSFY 223
D E C CRCEG S F+
Sbjct: 4 DDEICRVCRCEGAPDSPLFH 23
>SPAC23C4.06c |||methyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 327
Score = 23.8 bits (49), Expect = 5.8
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +2
Query: 137 QRQSHQKVCDQEYC*SCRCEGHKRSLSFYFIPTSQAV 247
++QSH ++ + C S GH + YF + Q +
Sbjct: 51 RQQSHSRITISKQCVSWIGNGHAAETTLYFPASHQQI 87
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 23.4 bits (48), Expect = 7.7
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Frame = +3
Query: 6 WKYSDEDDSEVRNMTR---KRRNGGRAKHGR 89
W YS++ +EVRNM + + GG AK R
Sbjct: 543 WVYSEQQLAEVRNMEKLLDAQLMGGDAKVDR 573
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,060,036
Number of Sequences: 5004
Number of extensions: 16458
Number of successful extensions: 58
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -