Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K17
(306 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1177 + 35147036-35147038,35147128-35147220,35147322-351474... 141 9e-35
06_02_0037 - 10856616-10856915,10857527-10860238 28 1.3
09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832 27 3.8
04_03_0977 + 21381857-21383757,21384299-21384458,21384669-213847... 26 5.1
01_05_0195 - 19111983-19112477,19112646-19113950,19114053-191143... 26 5.1
04_01_0268 - 3585907-3588086,3590167-3590326 26 6.7
03_06_0101 + 31653860-31654327 26 6.7
01_05_0033 + 17390571-17390894,17394152-17394199,17394479-173945... 26 6.7
06_01_1195 + 10280864-10280979,10281024-10281115,10281211-102821... 25 8.9
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 25 8.9
>01_06_1177 +
35147036-35147038,35147128-35147220,35147322-35147406,
35147588-35147760
Length = 117
Score = 141 bits (342), Expect = 9e-35
Identities = 61/87 (70%), Positives = 73/87 (83%)
Frame = +3
Query: 45 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFT 224
MT KRRNGGR KHGRGHVK +RC+NCA+C PKDKAIK+F +RNIVE AA+RD+ EA V
Sbjct: 1 MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVEQAAIRDVQEACVHD 60
Query: 225 SFQLPKLYAKLHYCVSCAIHSKVVRNR 305
+ LPKLYAK+H+CVSCAIH+ +VR R
Sbjct: 61 GYVLPKLYAKVHHCVSCAIHAHIVRVR 87
>06_02_0037 - 10856616-10856915,10857527-10860238
Length = 1003
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = -3
Query: 250 AYSLGSWNEVKTEASFMSLTAAASTIFLITNFLMALSL 137
AY+ GSW ++ S L AA + ++T + SL
Sbjct: 525 AYAAGSWRDIGASLSIFVLVAAIIVLLVVTYIVSCKSL 562
>09_04_0040 - 14029565-14029810,14030904-14031182,14032056-14032832
Length = 433
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/50 (30%), Positives = 20/50 (40%)
Frame = +3
Query: 48 TRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVR 197
T RR A G G AV C +CA P + A+ + + A R
Sbjct: 78 TSSRRTDPPAGAGAGEDDAVACPSCAEPFPSELAVSDHLDGCLAAAGGAR 127
>04_03_0977 +
21381857-21383757,21384299-21384458,21384669-21384717,
21385117-21385169
Length = 720
Score = 26.2 bits (55), Expect = 5.1
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 12 YSDEDDSEVRNMTRKRRNGGR 74
Y DEDD R+RR GGR
Sbjct: 188 YDDEDDDGPPGYRRERRGGGR 208
>01_05_0195 - 19111983-19112477,19112646-19113950,19114053-19114322,
19118884-19118950,19119229-19119284,19119530-19119590,
19120181-19120297,19120570-19120682,19120774-19120848,
19121464-19122045,19122056-19122271,19122372-19122497,
19126152-19126190,19126266-19126360,19126423-19126962,
19127102-19127327,19127385-19127437,19127534-19127701,
19128353-19128707,19128785-19128876,19129891-19129993
Length = 1717
Score = 26.2 bits (55), Expect = 5.1
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 3 GWKY--SDEDDSEVRNMTRKRRNGGRAKHGRGHVKAVRCTN 119
GW++ S + + + M+ +R GGR GRG ++ N
Sbjct: 1018 GWRWFCSVTEREQYKTMSSRRGGGGRRGRGRGRGRSALAEN 1058
>04_01_0268 - 3585907-3588086,3590167-3590326
Length = 779
Score = 25.8 bits (54), Expect = 6.7
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = -3
Query: 301 LRTTLLWIAHDTQ*WSFAYSLGSWNEVKT 215
+R +LW+A+ W+ Y+LGS + +T
Sbjct: 96 VRALVLWLAYQLGGWAGTYALGSMSLGRT 124
>03_06_0101 + 31653860-31654327
Length = 155
Score = 25.8 bits (54), Expect = 6.7
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +3
Query: 84 GRGHVKAVR-CTNCARCVPKDKAIKKFVIRNIVEAAAVR 197
GR VR T CARCVP D A V AA++R
Sbjct: 20 GRARDMYVRGMTGCARCVPADAAFGYPVFVPSSAAASMR 58
>01_05_0033 +
17390571-17390894,17394152-17394199,17394479-17394526,
17395224-17395400,17395492-17395642,17395742-17395828,
17397236-17397360,17397608-17397726,17399983-17400082,
17400188-17400223
Length = 404
Score = 25.8 bits (54), Expect = 6.7
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 52 ANAAMEDALNTAVATLRPSGAPTALAAC 135
A AAM + A LRP+G P+ AC
Sbjct: 13 AQAAMGNGNGVAPPPLRPAGRPSGAPAC 40
>06_01_1195 +
10280864-10280979,10281024-10281115,10281211-10282156,
10282378-10283075,10283140-10284068
Length = 926
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +2
Query: 200 HKRSLSFYFIPTSQ-AVCKTPLLRVMR 277
H RSLSF++ P Q A +P LR++R
Sbjct: 501 HVRSLSFFYNPKEQLASLCSPQLRMLR 527
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 25.4 bits (53), Expect = 8.9
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +3
Query: 3 GWKYSDEDDSEVRNMT----RKRRNGGR-AKHGRGHVKAVRCTNCARCVPKDKAI 152
GW Y+D D E T RK +G R H G K + C++ V D ++
Sbjct: 160 GWSYNDHDSEEEEEATGGGIRKLASGARNTIHAVG--KRLHCSSFPAVVDDDSSV 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,357,409
Number of Sequences: 37544
Number of extensions: 123345
Number of successful extensions: 470
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 363831720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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