Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K17
         (306 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   148   9e-37
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    31   0.21 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    31   0.21 
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    29   0.85 
AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical ...    27   2.0  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   2.6  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    26   6.0  
U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly glu...    26   6.0  
U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly glu...    26   6.0  
Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical pr...    25   7.9  
AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical ...    25   7.9  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  148 bits (358), Expect = 9e-37
 Identities = 66/87 (75%), Positives = 73/87 (83%)
 Frame = +3

Query: 45  MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFT 224
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI +AS +T
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 225 SFQLPKLYAKLHYCVSCAIHSKVVRNR 305
            + LPKLY KLHYC++CAIHSKVVRNR
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNR 87


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 93  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFTSFQL-PKLYAKLH--Y 263
           H+K ++C NC+     +K+++  +IR+  E A   ++ +A      +L P    K H  Y
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 264 C 266
           C
Sbjct: 140 C 140


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 30.7 bits (66), Expect = 0.21
 Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +3

Query: 93  HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFTSFQL-PKLYAKLH--Y 263
           H+K ++C NC+     +K+++  +IR+  E A   ++ +A      +L P    K H  Y
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 264 C 266
           C
Sbjct: 258 C 258


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +3

Query: 24  DDSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 137
           +D  +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 79  NDDLIRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AF016416-8|AAB65271.1|  388|Caenorhabditis elegans Hypothetical
           protein F29A7.1 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 96  VKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINEASVFTSFQ 233
           V   R  N   C+   K IK+F ++ I  AA  R + E  + T+ Q
Sbjct: 129 VSVYRTMNEGNCINASKVIKEFRVKTIRLAACSRSLEE-KIVTNIQ 173


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 36  VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 137
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +3

Query: 171 NIVEAAAVRDINEASVFTSFQLPKLYAKLHYCVSCAIHSKVVRNR 305
           N++    +RD N   +   ++L  +   L YC+   +++  V NR
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANR 126


>U39850-6|AAM45366.1| 1081|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform a
           protein.
          Length = 1081

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   WKYSDEDDSEVRNMTRKRRNGGRAK 80
           ++  DEDD   R  +RKRR+  R+K
Sbjct: 897 YEEEDEDDMIERRSSRKRRSDSRSK 921


>U39850-3|AAM45367.2| 1647|Caenorhabditis elegans Polyq (poly
           glutamine tract) toxicityenhancer protein 1, isoform b
           protein.
          Length = 1647

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 6   WKYSDEDDSEVRNMTRKRRNGGRAK 80
           ++  DEDD   R  +RKRR+  R+K
Sbjct: 897 YEEEDEDDMIERRSSRKRRSDSRSK 921


>Z81564-9|CAB04575.1|  724|Caenorhabditis elegans Hypothetical
           protein K05C4.9 protein.
          Length = 724

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 165 IRNIVEAAAVRDINEASVFTSFQLPKLYAKL 257
           +++ V +  +R +N A++ TSFQ    Y+KL
Sbjct: 295 LKHAVFSTEIRVLNSATLETSFQTLNYYSKL 325


>AF077531-1|AAC64610.1|  374|Caenorhabditis elegans Hypothetical
          protein F13C5.2 protein.
          Length = 374

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 18 DEDDSEVRNMTRKRRNGGRAKHGRG 92
          D DD E  +   KR   GR + GRG
Sbjct: 19 DSDDGEEDDFKSKRTPSGRGRGGRG 43


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,028,343
Number of Sequences: 27780
Number of extensions: 99868
Number of successful extensions: 341
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 341
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 323034540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)