Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K17
         (306 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    22   1.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    22   1.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    22   1.5  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   2.0  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          20   6.0  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    20   6.0  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  MTRKRRNGGRAKHGRGHVKAVRCTNC 122
           +T+KR  G       G  + V CTNC
Sbjct: 405 VTQKREGGPPTGATTGPNEIVTCTNC 430


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  MTRKRRNGGRAKHGRGHVKAVRCTNC 122
           +T+KR  G       G  + V CTNC
Sbjct: 425 VTQKREGGPPTGATTGPNEIVTCTNC 450


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 45  MTRKRRNGGRAKHGRGHVKAVRCTNC 122
           +T+KR  G       G  + V CTNC
Sbjct: 374 VTQKREGGPPTGATTGPNEIVTCTNC 399


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 2.0
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -2

Query: 188 GSFNNIPDHKLFDGF 144
           G  + I  HK FDGF
Sbjct: 615 GGISEIQKHKWFDGF 629


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
 Frame = -2

Query: 206 VYVPHSGSFNNIPDHKLFD-----GFVFGH 132
           VY+ H    NN  + K F+     G VF H
Sbjct: 94  VYIEHLTKLNNAIEEKRFELTNRKGVVFHH 123


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = +3

Query: 261 YCVSCAIH 284
           YCV+C +H
Sbjct: 542 YCVACGLH 549


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,190
Number of Sequences: 438
Number of extensions: 1089
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)