Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K16
         (353 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    26   2.0  
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    25   3.4  
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac...    25   4.5  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    25   4.5  
SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces p...    24   6.0  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    24   6.0  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    24   7.9  

>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 12/22 (54%), Positives = 17/22 (77%)
 Frame = +3

Query: 132 VLGIVKDCVDDDVYMCLKEKVL 197
           V+  VK+ +DDD+Y  LKEK+L
Sbjct: 107 VVNCVKE-IDDDLYNTLKEKLL 127


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
 Frame = -2

Query: 250 TPSIKVISLFDLKVSAYFKTFSLRHIYTSSSTQSLTMPKTL-----PPIPRSVDS 101
           +PS    S      S+ F+ FS R     SST +L +   L     PP PR+  S
Sbjct: 584 SPSPSATSSIKKNPSSIFRRFSSRRKQNKSSTSTLQISAPLETSQSPPTPRTKPS 638


>SPAC23C4.02 |crn1||actin binding protein, coronin
           Crn1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 243 DGVTLESKGSPRSARAWEPLSDEP 314
           DG  L +    +  R W+P +D+P
Sbjct: 187 DGTRLVTTSRDKKVRVWDPRTDKP 210


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
            Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 136  WALLRTVSTMTCICASRRRF 195
            W L +TV +M CI A +R F
Sbjct: 1702 WCLAKTVLSMLCIIAIQRFF 1721


>SPBC106.13 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 404

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 278 PWRTFALQGDTINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQNAATDSKI 111
           P + + L+   I  S+  LR     I ++L  E+H+     T L + +NA+ D KI
Sbjct: 5   PEQQYILEKPGILLSFEQLRINFKHILRHLEHESHVINSTLTTLISQENASMDEKI 60


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
 Frame = -2

Query: 328 ASLAFGSSDSGSQARADLGEPLLSKVTPSI---KVISLFDLKVSAYFKTFSLRHIYTSSS 158
           A L  GS  SG       G+PL   +TP     KV   +  ++   FK  S+  + +  +
Sbjct: 41  AELWMGSHPSGPSFVMQTGKPLSELLTPETVGEKVYKKYGKQLPFLFKVLSINKVLSIQA 100

Query: 157 TQSLTMPKTL 128
                + K L
Sbjct: 101 HPDKPLGKQL 110


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -1

Query: 248 TINQSYLPLRPQSLCIFQNLLLEAHIHVIVDTVLNNAQN 132
           T+N S+  ++  +L +F + + + HI     T+LN   N
Sbjct: 383 TLNASFSTIQFVALGVFHSKISDPHIGGTYMTILNTLSN 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,487,757
Number of Sequences: 5004
Number of extensions: 28263
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)