Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K15
(431 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 146 1e-36
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 138 3e-34
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 85 6e-18
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 73 1e-14
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 31 0.076
SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces po... 31 0.100
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 31 0.100
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.70
SPBC19G7.06 |mbx1||MADS-box transcription factor Mbx1|Schizosacc... 27 1.2
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 2.2
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 2.2
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 25 5.0
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 25 5.0
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 25 5.0
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ... 24 8.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 8.7
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 146 bits (355), Expect = 1e-36
Identities = 62/90 (68%), Positives = 73/90 (81%)
Frame = +1
Query: 160 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 339
MRE IS+HVGQAG QIGNACWELYCLEHGIQP+G M + D F+TFFSETG GK
Sbjct: 1 MREIISIHVGQAGTQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGK 60
Query: 340 HVPRAVFVDLEPTVVDEVRTGTYRQLYHPE 429
+VPR+++VDLEP V+D+VRTG YR L+HPE
Sbjct: 61 YVPRSIYVDLEPNVIDQVRTGPYRDLFHPE 90
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 138 bits (334), Expect = 3e-34
Identities = 65/95 (68%), Positives = 74/95 (77%), Gaps = 5/95 (5%)
Frame = +1
Query: 160 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSE 324
MRE ISVHVGQAGVQIGNACWELYCLEHGI PDG PT+ K +D F TFFSE
Sbjct: 1 MREVISVHVGQAGVQIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSE 59
Query: 325 TGAGKHVPRAVFVDLEPTVVDEVRTGTYRQLYHPE 429
TG GK VPR+++VDLEP V+D+VRTG Y+ L+HPE
Sbjct: 60 TGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPE 94
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 84.6 bits (200), Expect = 6e-18
Identities = 39/89 (43%), Positives = 57/89 (64%)
Frame = +1
Query: 163 RECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGKH 342
RE I++ GQ G QIG+ W+ CLEHGI PDG + + T G D + FF ++ ++
Sbjct: 3 REIITLQAGQCGNQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQSDDTRY 60
Query: 343 VPRAVFVDLEPTVVDEVRTGTYRQLYHPE 429
+PRA+ +DLEP VV+ + + TY LY+PE
Sbjct: 61 IPRAILIDLEPRVVNNILSDTYGSLYNPE 89
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 73.3 bits (172), Expect = 1e-14
Identities = 35/90 (38%), Positives = 49/90 (54%)
Frame = +1
Query: 160 MRECISVHVGQAGVQIGNACWELYCLEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGK 339
MRE + + GQ G Q+G A W EHG+ G T + N +F+E GK
Sbjct: 1 MREIVHIQAGQCGNQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGK 58
Query: 340 HVPRAVFVDLEPTVVDEVRTGTYRQLYHPE 429
+VPRAV VDLEP +D V++G + L+ P+
Sbjct: 59 YVPRAVLVDLEPGTMDAVKSGKFGNLFRPD 88
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 31.1 bits (67), Expect = 0.076
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Frame = +2
Query: 200 SRSEMPAGSCIALSTASNLM--VRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSIL 370
SRS P + ++S A+ Q+T P+ V + TP T SS L S+ P+ SSSIL
Sbjct: 346 SRSSKPTDTTNSISFANTTPENTSTQITSPTAVNSSTPITSSSV---LNSSTPITSSSIL 402
Query: 371 N 373
N
Sbjct: 403 N 403
Score = 27.9 bits (59), Expect = 0.70
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 328
+T S+S+ + P + S + S ++++S L +T + + T TP T SS
Sbjct: 1929 STPITSSSVLNSSTPITSSTV-VNSSTPITSSSVLNSSTPITSSTALNTSTPITSSSV-- 1985
Query: 329 ELASTFPVPSSSILN 373
L S+ P+ SSS+LN
Sbjct: 1986 -LNSSTPITSSSVLN 1999
Score = 27.5 bits (58), Expect = 0.93
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 328
+T S+S+ + P + S + S +++++ L +T + + T TP T SS
Sbjct: 405 STPITSSSVLNSSTPITSSSI-LNSSTPITSSTVLNSSTPITSSTALNTSTPITSSSV-- 461
Query: 329 ELASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L S+ P+ SSS+LN +T S + +T + I
Sbjct: 462 -LNSSTPITSSSVLNSSTPITSSTVVNTSTPI 492
Score = 27.5 bits (58), Expect = 0.93
Identities = 27/103 (26%), Positives = 49/103 (47%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALST 244
+L+ P+ S T I S+ +T S+S+ + P + S + + +++
Sbjct: 2345 VLNSSTPITSSTVVNTSTPITSSTALNT-STSITSSSVLNSSTPITSSTV-VNTSTPITS 2402
Query: 245 ASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 373
+S L +T + V T+ S SS+ L S+ P+ SSS+LN
Sbjct: 2403 SSVLNSSTPITSSTVVNTSTSITSSS--VLNSSTPITSSSVLN 2443
Score = 27.1 bits (57), Expect = 1.2
Identities = 23/91 (25%), Positives = 47/91 (51%), Gaps = 1/91 (1%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 331
+T S+S+ + P + S + S +++++ L +T S + ++ + SS+
Sbjct: 3177 STAITSSSIVNSSTPITSSSV-LNSSTPITSSTTLNTSTPITSSSVLNSSTAITSSS--V 3233
Query: 332 LASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L S+ P+ SSS+LN +T S + +T + I
Sbjct: 3234 LNSSTPITSSSVLNSSTPITSSTVVNTSTPI 3264
Score = 27.1 bits (57), Expect = 1.2
Identities = 29/103 (28%), Positives = 45/103 (43%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALST 244
+L+ P+ S T I S+ S +L T S S + + + I ST
Sbjct: 3269 VLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSSTAITSST 3328
Query: 245 ASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 373
A N +T S + ++ + SS+ L S+ PV SSS+LN
Sbjct: 3329 ALNTST--PITSSSVLNSSTAITSSSI--LNSSTPVTSSSVLN 3367
Score = 26.6 bits (56), Expect = 1.6
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 328
+T S+S+ + P + S + S ++++S L +T + V + TP T S+A
Sbjct: 1221 STPITSSSVLNSSTPITSSSI-LNSSTPITSSSVLNSSTPITSSTVVNSSTPITSSTA-- 1277
Query: 329 ELASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L ++ P+ SSS+LN +T S +T + I
Sbjct: 1278 -LNTSIPITSSSVLNSSTPITSSTALNTSTSI 1308
Score = 26.6 bits (56), Expect = 1.6
Identities = 26/92 (28%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 328
+T S+S+ + P + S + + ++++S L +T + V T TP T S+A
Sbjct: 2721 STPITSSSVLNSSTPITSSTV-VNTSTPITSSSVLNSSTPITSSTVVNTSTPITSSTA-- 2777
Query: 329 ELASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L ++ P+ SSS+LN +T S + +T + I
Sbjct: 2778 -LNTSTPITSSSVLNSSTPITSSTVVNTSTPI 2808
Score = 25.8 bits (54), Expect = 2.8
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 167 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 343
S L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 939 STGLNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 993
Query: 344 FPVPSSSILN-PL*LTRSALAHTDSCI 421
P+ SSS+LN +T S++ ++ + I
Sbjct: 994 TPITSSSVLNTSTPITSSSVLNSSTAI 1020
Score = 25.8 bits (54), Expect = 2.8
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 343
S +L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 1875 STALNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 1929
Query: 344 FPVPSSSILN 373
P+ SSS+LN
Sbjct: 1930 TPITSSSVLN 1939
Score = 25.8 bits (54), Expect = 2.8
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +2
Query: 167 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 343
S +L T S S + + + I ST N +T + + T TP T SS L S+
Sbjct: 2067 STALNTSTPITSSSVLNSSTPITSSTVLNSST--PITSSTALNTSTPITSSSV---LNSS 2121
Query: 344 FPVPSSSILN 373
P+ SSS+LN
Sbjct: 2122 TPITSSSVLN 2131
Score = 25.4 bits (53), Expect = 3.8
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 152 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 325
+T S+S+ + P S S + + + I ST N +T S V + TP T S+A
Sbjct: 1533 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVVNSSTPITSSTA- 1589
Query: 326 PELASTFPVPSSSILN 373
L ++ P+ SSS+LN
Sbjct: 1590 --LNTSTPITSSSVLN 1603
Score = 25.4 bits (53), Expect = 3.8
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Frame = +2
Query: 206 SEMPAGSCIALSTA----SNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 373
S P S AL+T+ S+ +V S ST ++ L S+ P+ SSS+LN
Sbjct: 3416 SSTPITSSTALNTSTPITSSTVVNSSTPITSSSVLNSSTAIASSSILNSSTPITSSSVLN 3475
Query: 374 PL*LTRSALAHTDSCII 424
S+ T S +I
Sbjct: 3476 SSTPISSSTVITSSVVI 3492
Score = 25.0 bits (52), Expect = 5.0
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 206 SEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 373
S S ++++S L +T S + T TP T SS L S+ P+ SSSILN
Sbjct: 374 SPTAVNSSTPITSSSVLNSSTPITSSSILNTSTPITSSSV---LNSSTPITSSSILN 427
Score = 25.0 bits (52), Expect = 5.0
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKP-ESRSEMPAGSCIALS 241
+L+ P+ S T I S+ +T S+++ + P S S + + + I S
Sbjct: 521 VLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPITSS 579
Query: 242 TASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 373
T N +TR S + + TP T S+ L S+ P+ SSS+LN
Sbjct: 580 TVVNTST--PITRYSVLNSSTPITSSTV---LNSSTPITSSSVLN 619
Score = 25.0 bits (52), Expect = 5.0
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 152 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 325
+T S+S+ + P S S + + + I ST N +T S + + TP T S+
Sbjct: 753 STPITSSSILNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSSVLNSSTPITSSTV- 809
Query: 326 PELASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L S+ P+ SSS+LN +T S + +T + I
Sbjct: 810 --LNSSTPITSSSVLNSSTPITSSTVVNTSTPI 840
Score = 25.0 bits (52), Expect = 5.0
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARP 328
+T S+++ + P + S + S +++++ L +T S + + TP T S+
Sbjct: 1041 STPITSSTVVNTSTPITSSTV-VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV-- 1097
Query: 329 ELASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L S+ P+ SSS+LN +T S + +T + I
Sbjct: 1098 -LNSSTPITSSSVLNSSTPITSSTVVNTSTPI 1128
Score = 24.6 bits (51), Expect = 6.6
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Frame = +2
Query: 152 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 325
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 453 STPITSSSVLNSSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 509
Query: 326 PELASTFPVPSSSILN-PL*LTRSALAHTDSCI 421
L ++ P+ SSS+LN +T S +T + I
Sbjct: 510 --LNTSTPITSSSVLNSSTPITSSTALNTSTSI 540
Score = 24.6 bits (51), Expect = 6.6
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +2
Query: 224 SCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 373
S ++++S L +T + + T TP T SS L S+ P+ SSS+LN
Sbjct: 608 SSTPITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSVLN 655
Score = 24.6 bits (51), Expect = 6.6
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Frame = +2
Query: 236 LSTASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 373
++++S L +T + + T TP T SS L S+ P+ SSSILN
Sbjct: 720 ITSSSVLNSSTPITSSTALNTSTPITSSSV---LNSSTPITSSSILN 763
Score = 24.6 bits (51), Expect = 6.6
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALST 244
+L+ P+ S T I S+ S +L T S S + + + I ST
Sbjct: 989 VLNSSTPITSSSVLNTSTPITSSSVLNSSTAITSSTALNTSTPITSSSVLNSSTPITSST 1048
Query: 245 ASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 373
N +T + V + TP T S+A L ++ P+ SSS+LN
Sbjct: 1049 VVNTST--PITSSTVVNSSTPITSSTA---LNTSTPITSSSVLN 1087
Score = 24.6 bits (51), Expect = 6.6
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Frame = +2
Query: 152 NTKCVSASLYTLAKP-ESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSAR 325
+T S+S+ + P S S + + + I ST N +T + V + TP T S+A
Sbjct: 1989 STPITSSSVLNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTA- 2045
Query: 326 PELASTFPVPSSSILN 373
L ++ P+ SSS+LN
Sbjct: 2046 --LNTSTPITSSSVLN 2059
Score = 24.6 bits (51), Expect = 6.6
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 3/122 (2%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKP-ESRSEMPAGSCIALS 241
+L+ P+ S T I S+ +T S+++ + P S S + + + I S
Sbjct: 2633 VLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPITSS 2691
Query: 242 TASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDS 415
T N +T + V + TP T S+A L ++ P+ SSS+LN +T S + +T +
Sbjct: 2692 TVVNTST--PITSSTVVNSSTPITSSTA---LNTSTPITSSSVLNSSTPITSSTVVNTST 2746
Query: 416 CI 421
I
Sbjct: 2747 PI 2748
Score = 24.2 bits (50), Expect = 8.7
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKPESRSEMPAGSCIALST 244
+L+ P+ S T I S+ S +L T S S + + + I ST
Sbjct: 1769 VLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSST 1828
Query: 245 ASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN 373
N +T + V + TP T S+A L ++ P+ SSS+LN
Sbjct: 1829 VVNTST--PITSSTVVNSSTPITSSTA---LNTSTPITSSSVLN 1867
Score = 24.2 bits (50), Expect = 8.7
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +2
Query: 167 SASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVET-TPSTRSSARPELAST 343
S +L T S S + + + I ST N +T + V + TP T S+ L S+
Sbjct: 2475 STALNTSTPITSSSVLNSSTPITSSTVVNTST--PITSSTVVNSSTPITSSTV---LNSS 2529
Query: 344 FPVPSSSILN-PL*LTRSALAHTDSCI 421
P+ SSS+LN +T S + +T + I
Sbjct: 2530 TPITSSSVLNSSTPITSSTVVNTSTPI 2556
Score = 24.2 bits (50), Expect = 8.7
Identities = 33/122 (27%), Positives = 56/122 (45%), Gaps = 3/122 (2%)
Frame = +2
Query: 65 ILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAKP-ESRSEMPAGSCIALS 241
+L+ P+ S T I S+ +T S+++ + P S S + + + I S
Sbjct: 2861 VLNSSTPITSSTALNTSTSITSSSVLNS-STPITSSTVVNTSTPITSSSVLNSSTPITSS 2919
Query: 242 TASNLMVRCQLTRPSGVET-TPSTRSSARPELASTFPVPSSSILN-PL*LTRSALAHTDS 415
T N +T + V + TP T S+A L ++ P+ SSS+LN +T S +T +
Sbjct: 2920 TVVNTST--PITSSTVVNSSTPITSSTA---LNTSTPITSSSVLNSSTPITSSTALNTST 2974
Query: 416 CI 421
I
Sbjct: 2975 SI 2976
Score = 24.2 bits (50), Expect = 8.7
Identities = 28/122 (22%), Positives = 49/122 (40%), Gaps = 2/122 (1%)
Frame = +2
Query: 14 STSTPVLYKLI*RIFKRILSFGKPLNWSR*TTTD*FILSTLKFKKLNTKCVSASLYTLAK 193
+TSTP+ + I S LN S T+ + S+ S + + +
Sbjct: 2947 NTSTPITSSSVLNSSTPITS-STALNTSTSITSSSVLNSSTPITSSTVVNTSTPITSSSV 3005
Query: 194 PESRSEMPAGSCIALST--ASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSI 367
S + + + + + ST S+ +V S ST ++ L S+ P+ SSS+
Sbjct: 3006 LNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSV 3065
Query: 368 LN 373
LN
Sbjct: 3066 LN 3067
Score = 24.2 bits (50), Expect = 8.7
Identities = 20/74 (27%), Positives = 39/74 (52%)
Frame = +2
Query: 152 NTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPE 331
+T S++ + P + S + S A++++S + +T S + ++ + SS+
Sbjct: 3069 STPITSSTALNTSTPITSSSV-LNSSTAITSSSIVNSSTPITSSSVLNSSTAITSSSI-- 3125
Query: 332 LASTFPVPSSSILN 373
L S+ P+ SSSILN
Sbjct: 3126 LNSSTPITSSSILN 3139
>SPBC36.04 |cys11|cys1a|cysteine synthase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 351
Score = 30.7 bits (66), Expect = 0.100
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 9/91 (9%)
Frame = +2
Query: 170 ASLYTLAKPESRSEMPAGSCIALSTASNLMVR-CQLTRPSGVETT---PSTRSSARPEL- 334
A+ Y + E + ++ G I TA N + + R G + P+T+S A+ +
Sbjct: 57 AAYYVVRDAEKKGKLSRGGTIVEGTAGNTGIGLAHIARARGYKCVIYMPNTQSQAKIDTL 116
Query: 335 ----ASTFPVPSSSILNPL*LTRSALAHTDS 415
A PVP + NPL A H +S
Sbjct: 117 KFLGAEVHPVPVAPFSNPLNYNHQARRHAES 147
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 30.7 bits (66), Expect = 0.100
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +2
Query: 200 SRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 373
S S + + + ST S+L ++PS T+ ST SSA P S+ + SSS+++
Sbjct: 160 SSSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVS 217
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.70
Identities = 15/62 (24%), Positives = 31/62 (50%)
Frame = +2
Query: 179 YTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPS 358
++ A+ + S+ + S + Q +PSGVE T ++R++A+ + ST + S
Sbjct: 12 FSYARALASSQSNKSNSTKASENNTATAEKQAVKPSGVEPTNTSRANAQKKTESTGKITS 71
Query: 359 SS 364
+
Sbjct: 72 EA 73
>SPBC19G7.06 |mbx1||MADS-box transcription factor
Mbx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 27.1 bits (57), Expect = 1.2
Identities = 20/82 (24%), Positives = 36/82 (43%)
Frame = +2
Query: 143 KKLNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 322
K LN V+ +A + S P+ +C + + + N + + TTP+T S
Sbjct: 82 KFLNKDFVTVDPLRIASVTTYSAQPSNNCSSATDSENDFQSFTIKSSTTYHTTPTTASEN 141
Query: 323 RPELASTFPVPSSSILNPL*LT 388
+ + T P +S+ N L L+
Sbjct: 142 KKIESITIP-DHASVYNDLPLS 162
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 26.2 bits (55), Expect = 2.2
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 281 PSGVETTPSTRSSARPELASTFPV 352
P+ VETTPST +SA + + F +
Sbjct: 350 PANVETTPSTATSAPKKSTAPFAI 373
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 26.2 bits (55), Expect = 2.2
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 194 PESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSARPELASTFPVPSSSILN 373
P S S + LST+S ++ T SG PST SS+ P +S P +S+L+
Sbjct: 483 PISSSSSASSPQSTLSTSSEVVSEVSSTLLSGSSAIPST-SSSTPS-SSIISSPMTSVLS 540
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 289 PRWSCQLASDHQVGCRAQGNTAPSRHFRSGLR 194
P SC+L S+H+ C + N++ S + + R
Sbjct: 110 PHLSCELPSEHREKCLKRRNSSLSSNLHANKR 141
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.0 bits (52), Expect = 5.0
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = +3
Query: 3 TRVSRHRRRSYISSFNGFSNVFFRSASLLTGRAERRLINLFYLHLSSKNSIQN 161
T+ + R+ S F F NV + +LTG ++ ++ L LSS+ +
Sbjct: 861 TKCYSYLRQCKSSPFINFWNVSYGKYLILTGNTDKGILQLKKYSLSSEEDFNS 913
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.0 bits (52), Expect = 5.0
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = -3
Query: 318 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGL 190
EE EG TP +T+R D+V++ + AG++D+ S L
Sbjct: 320 EEISEGEEYTPIEESKEPITVRRDSVIQIDESSAGLTDVISEL 362
>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 868
Score = 24.2 bits (50), Expect = 8.7
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 149 LNTKCVSASLYTLAKPESRSEMPAGSCIALSTASNLMVRCQLTRPSGVETTPSTRSSA 322
LNT C+ + + + +E A S I+ TA NL+ C L+ P +P+ +++A
Sbjct: 132 LNTFCLGKTAPSDKNRYTTTECLACSKISNETAENLLFLC-LSSPWIFRASPTLQNTA 188
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.2 bits (50), Expect = 8.7
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 318 EERVEGVVSTPDGLVSWHLTIRLDAVLKAIQLPAGISDLDSGLANVY 178
E+ V GVV + + W L++ LD + + G+ D+ L ++
Sbjct: 399 EDSVIGVVGADNQISLWDLSVELDEEEQDSRAAEGLQDVPPQLMFIH 445
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,867,770
Number of Sequences: 5004
Number of extensions: 38194
Number of successful extensions: 178
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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