Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K14
(425 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 83 2e-17
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 55 5e-09
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 48 5e-07
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 45 6e-06
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 43 2e-05
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 1e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 1e-04
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.001
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 36 0.002
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 36 0.002
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 35 0.006
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 35 0.006
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 33 0.014
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 33 0.014
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 33 0.025
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 32 0.032
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.30
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 28 0.53
SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces... 27 0.92
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 1.2
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 27 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 26 2.1
SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||... 26 2.8
SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces ... 26 2.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 2.8
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 25 3.7
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 4.9
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 4.9
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 25 4.9
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 4.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 6.5
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.5
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 24 8.6
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 24 8.6
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 24 8.6
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 83.0 bits (196), Expect = 2e-17
Identities = 39/67 (58%), Positives = 49/67 (73%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTSQYMQRMA 197
E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVAL QRKE R++ L +Q R
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQARNQ 458
Query: 198 SITMQQM 218
QQ+
Sbjct: 459 FRLQQQV 465
Score = 46.4 bits (105), Expect = 2e-06
Identities = 22/57 (38%), Positives = 35/57 (61%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTSQYMQ 188
++ + +GFGFV +++ E A KAV E+N + K LYV Q+K +R+ L +Y Q
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ 352
Score = 44.8 bits (101), Expect = 6e-06
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA--LTQRK-----EDRKAHLTS 176
E G +KG+GFV F S E A A+ +NG ++ K +YV +++R+ E KA+ T+
Sbjct: 203 ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANFTN 262
Query: 177 QYMQRM-ASITMQQMGQIF 230
Y++ + IT Q+ +F
Sbjct: 263 VYIKNLDTEITEQEFSDLF 281
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 54.8 bits (126), Expect = 5e-09
Identities = 24/53 (45%), Positives = 36/53 (67%)
Frame = +3
Query: 30 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTSQYMQ 188
SKG+GFV FS P EA +A+ +NG + G K L+V +++EDRK L++ + Q
Sbjct: 461 SKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 48.4 bits (110), Expect = 5e-07
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTSQYMQRMAS 200
G SKG+GFV F E A +A +NG +VG K ++V +RK DR L + + + S
Sbjct: 422 GISKGYGFVAFRQIEAAVRAKDTLNGMMVGKKRIFVCFAERKSDRIRRLQAFFANKPTS 480
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.8 bits (101), Expect = 6e-06
Identities = 20/48 (41%), Positives = 31/48 (64%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRK 161
E R +GFGFV F++ E+ ++A+ EMNG+ VG L V +ED++
Sbjct: 253 EQRRGRGFGFVSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFREDKQ 300
Score = 27.5 bits (58), Expect = 0.92
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +3
Query: 36 GFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 131
G FV F++ E+ KA+ +NG+ + + + V
Sbjct: 90 GIAFVTFNNQEDVDKAIETLNGKTLDDREIVV 121
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 43.2 bits (97), Expect = 2e-05
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDR 158
E+GRSKG+GFV + S E A A+ MN + + KP+ V+ ++E +
Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGK 181
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 316 QIRPTPRWTAQPPVRPSTPTPASA 387
++ TP+ T P P+TP P SA
Sbjct: 201 KVAVTPQSTLPPGFSPATPAPTSA 224
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/54 (37%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +3
Query: 3 TRVMLE-DGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRK 161
T+V+ + +G+++GFGFV F ++ KA E NG+ +G++P V L++ D K
Sbjct: 59 TKVVRDREGKTRGFGFVSFKDSDQFLKAWREKNGKYIGSRP--VKLSRATSDVK 110
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 40.3 bits (90), Expect = 1e-04
Identities = 20/49 (40%), Positives = 29/49 (59%)
Frame = +3
Query: 30 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTS 176
S+G+GFV F+ + A+ EM G+I G +P+ V L K KAH+ S
Sbjct: 227 SRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLATPKS--KAHVFS 273
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 37.1 bits (82), Expect = 0.001
Identities = 17/35 (48%), Positives = 22/35 (62%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP 122
+ GR KGFG+V FS + A K V EMNG + +P
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCV-EMNGHFIAGRP 435
Score = 33.5 bits (73), Expect = 0.014
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 5/36 (13%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVT-----EMNGRIV 110
+ GRSKG+G+V F +PE A AV E++GR+V
Sbjct: 299 QSGRSKGYGYVDFETPEAAKAAVAANGTKEIDGRMV 334
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 36.3 bits (80), Expect = 0.002
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 134
GRSKGFG V F + +A ++ ++NG G +PL ++
Sbjct: 317 GRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLS 353
Score = 28.3 bits (60), Expect = 0.53
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 12 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAH 167
M ++GRS+G G V SS +EA A+ ++ + L V L DR AH
Sbjct: 216 MNQEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRL-----DRFAH 262
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 36.3 bits (80), Expect = 0.002
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Frame = +3
Query: 21 DGRSKGFGFVCFSSPEEATKAVTEMNGRIV-GTKPLYVAL 137
+GRSKG + FS P +AT+A + GR+V GT+ + V +
Sbjct: 92 NGRSKGIATIIFSRPGDATRAYEQYEGRLVDGTRKMKVEI 131
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 34.7 bits (76), Expect = 0.006
Identities = 23/78 (29%), Positives = 38/78 (48%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTSQYMQRMA 197
+ RSKGFG++ + +P A A+ +MNG + + + V L K + TS ++R
Sbjct: 375 DQNRSKGFGYIQYRNPISARNALEKMNGFDLAGRNMRVCLGNDKFTTET--TSSMLKRFD 432
Query: 198 SITMQQMGQIFQPSSAGG 251
+Q + QPS G
Sbjct: 433 ETLARQ--ERSQPSQRNG 448
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 34.7 bits (76), Expect = 0.006
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV--ALTQRKEDRKAHLTSQYMQR 191
++G S+ F F+ F + E+A KA+ +N V T + V AL R + K S+Y +
Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLNKSYVETSRIEVHRALDYRSANEKLRPYSKYASK 100
Query: 192 MASITMQQ 215
+ +Q+
Sbjct: 101 NIELKLQK 108
Score = 31.5 bits (68), Expect = 0.057
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +3
Query: 30 SKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKEDRKAHLTSQ 179
S GFGFV F A A+ MNG ++ L + L+ + D A + Q
Sbjct: 664 SMGFGFVEFKDKASAVAAMHAMNGFVLDGHKLEIKLSHQGVDAAAEVRKQ 713
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 33.5 bits (73), Expect = 0.014
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPL 125
GRSKGFGF+ F S + A A+ +NGR + K +
Sbjct: 536 GRSKGFGFMQFISHKYALMALRWLNGREITVKKI 569
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 131
GR GF FV + A +A+ +NG + +P+ V
Sbjct: 145 GRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAV 180
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 33.5 bits (73), Expect = 0.014
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +3
Query: 30 SKGFGFVCFSSPEEATKAVTEMNGR 104
S+GFGF+ FS+ EEAT A+ +N +
Sbjct: 141 SRGFGFLSFSTVEEATSAIDNLNSQ 165
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 32.7 bits (71), Expect = 0.025
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +3
Query: 33 KGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVA 134
KG GFV +S A KA+ M G +VGT + +A
Sbjct: 332 KGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLA 365
Score = 31.9 bits (69), Expect = 0.043
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRK 149
G S+ +GFV FSS +E A+ M G + +PL +++ K
Sbjct: 221 GLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPK 262
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 32.3 bits (70), Expect = 0.032
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 131
E G+ KG+GF + P A AV +N GT+ L V
Sbjct: 41 ESGQPKGYGFCEYHDPATAASAVRNLNNYDAGTRRLRV 78
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 29.1 bits (62), Expect = 0.30
Identities = 12/35 (34%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTE---MNGRIVGTK 119
GRS+GFGF+ F +P+ + +++ ++G+I+ K
Sbjct: 201 GRSRGFGFLTFKNPKCVNEVMSKEHHLDGKIIDPK 235
Score = 25.4 bits (53), Expect = 3.7
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV-ALTQRKEDRKAHLTSQY 182
+ GR +GFGFV + + E A +A + KP+ V T + R +H Q+
Sbjct: 283 DTGRPRGFGFVTYEN-ESAVEATMSQPYITIHGKPVEVKRATPKASLRDSHDRHQH 337
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 28.3 bits (60), Expect = 0.53
Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +3
Query: 6 RVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALTQRKED-RKAHLTSQY 182
R+ + KGFG+V ++ ++A A++ G+ +G + L V L++ +E K ++S
Sbjct: 787 RIPKRFNQHKGFGYVVMTTNQDAENALSAA-GKQLGNRVLNVVLSKPRESLEKTRVSSND 845
Query: 183 MQRMA 197
+ +A
Sbjct: 846 NRTLA 850
>SPAC12G12.03 |cip2||RNA-binding protein Cip2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 0.92
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNG 101
++G +G F F SPEEA V +NG
Sbjct: 268 DNGVFRGLAFANFHSPEEAKTVVQVLNG 295
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.2
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Frame = +1
Query: 325 PTPRWTAQPPV----RPSTPTPASAYANMQPPYRPP 420
PTP+ +PP RPS P P+ A A P PP
Sbjct: 131 PTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPP 166
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 340 TAQPPVRPSTPTPASAYANMQPPYRPPP 423
+A PP P+ PTP S ++PP PP
Sbjct: 121 SAAPPSAPAPPTPQS---ELRPPTSAPP 145
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 26.6 bits (56), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNG 101
E GR+KGF FV + + A KA ++G
Sbjct: 238 ETGRAKGFAFVSYYDRDCAIKARDRLDG 265
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +1
Query: 334 RWTAQPPVRPSTPT-PASAYANMQPPYRPPP 423
+ + +PPVRP+ PT P + + PPP
Sbjct: 1350 KMSLEPPVRPAVPTSPKPQIPDSSNVHAPPP 1380
>SPAC11D3.14c |||oxoprolinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1260
Score = 25.8 bits (54), Expect = 2.8
Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Frame = +3
Query: 12 MLEDGRSKGFGFV-CFSSPEEATKAV----TEMNGRIVGTKPLYVALTQRKEDRKAHLTS 176
+ +D ++G V C++S EE + V T ++ +GT AL +RK ++ A + +
Sbjct: 41 LYDDAPTEGIRRVLCYASGEEIPRKVPLDLTRVSSIRMGTTVATNALLERKGEKTAFIIT 100
Query: 177 QYMQRMASITMQQMGQIF 230
+ + + I Q +F
Sbjct: 101 EGFRNLVEIGNQARPDLF 118
>SPBC16A3.18 |cip1||RNA-binding protein Cip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 490
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYV 131
++G +G F F PEEA V +NG + + L V
Sbjct: 238 DNGIFRGLAFANFYRPEEAQVVVQTLNGYEINGRRLRV 275
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 2.8
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +1
Query: 325 PTPRWTAQPP-VRPSTPTPASAYANMQPPYRPPP 423
P P T+ PP + P++ P + A Q PY+ PP
Sbjct: 729 PFPYNTSYPPYMSPTSNMPQAFQAYSQYPYQHPP 762
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/61 (18%), Positives = 25/61 (40%)
Frame = +1
Query: 145 ARKTAKPI*LHSTCNAWQVLLCNKWVRYSNQVVQEDTLCPTITXWHNAIYGSSDKCAQIR 324
AR A P H CN W+ + +++ + + + + W++ + S+ +
Sbjct: 526 ARFLANPADRHLICNDWERFVSTRFIVHRELMCNDKEAVAALDEWYSILSTCSNPSELLD 585
Query: 325 P 327
P
Sbjct: 586 P 586
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 25.0 bits (52), Expect = 4.9
Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +1
Query: 262 PTITX-WHNAIYGSSDKCAQIRPTPRWTAQPPVRPSTPTPASAYANMQPPYRP 417
P++T W Y S + R T PP+ P AS + QPPY P
Sbjct: 121 PSLTSDWIVDSYASDQDNPSVHTHNRTT--PPIPPPHLPNASGSSVYQPPYTP 171
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 4.9
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +1
Query: 313 AQIRPTPRWTAQPPVRPSTPTPASAYANMQPPYRPPP 423
A P P + PPV T TP ++ P PPP
Sbjct: 1029 ADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPP 1065
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 25.0 bits (52), Expect = 4.9
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Frame = +3
Query: 27 RSKGFGFVCFSSPEEATKAVTEMNGRIVGTKP--LYVALTQRKEDRKAHLTSQYMQR 191
RS+GFG+V F + + + A+ ++G + +P + VA +R R+ T +++R
Sbjct: 131 RSRGFGYVEFETADTLSAALA-LSGEDLMGRPVRITVAEPRRSFAREERSTGDWVRR 186
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.0 bits (52), Expect = 4.9
Identities = 9/27 (33%), Positives = 14/27 (51%)
Frame = +3
Query: 15 LEDGRSKGFGFVCFSSPEEATKAVTEM 95
+E KG+GF CF + A ++ M
Sbjct: 331 METNLCKGYGFACFEEEKSALICISAM 357
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 24.6 bits (51), Expect = 6.5
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +1
Query: 349 PPVRPSTPTPASAYANMQPPYRPPP 423
PP P P P + +PP +PPP
Sbjct: 5 PPGNPPPPPPPPGF---EPPSQPPP 26
>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 6.5
Identities = 12/31 (38%), Positives = 15/31 (48%)
Frame = +1
Query: 331 PRWTAQPPVRPSTPTPASAYANMQPPYRPPP 423
P+W PVR T P + + PP PPP
Sbjct: 36 PQWEC--PVRGLTIPPPPSVDHSAPPSGPPP 64
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 18 EDGRSKGFGFVCFSSPEEATKAV 86
+ G+ KGFGFV F + KA+
Sbjct: 264 DTGKCKGFGFVDFPDIDTCMKAM 286
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +1
Query: 346 QPPVRPSTPTPASAYANMQPPYRPP 420
+P V P+ PTPA A P PP
Sbjct: 724 KPQVTPAPPTPAPTPAVKHHPPPPP 748
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 24.2 bits (50), Expect = 8.6
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +3
Query: 24 GRSKGFGFVCFSSPEEATKAVTEMNGRIVGTK 119
G KG+ + +++ E+A KAV E N ++ K
Sbjct: 48 GYVKGYALIEYATLEQAQKAVDEKNLSLLDEK 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,791
Number of Sequences: 5004
Number of extensions: 45082
Number of successful extensions: 220
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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