Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K14
         (425 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.088
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    25   0.35 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   3.3  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   7.6  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   7.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.088
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +1

Query: 322 RPTPRWTAQPPVRPSTPTPASAYANMQPPYRPP 420
           +P+P  + Q P R S P P+       PP  PP
Sbjct: 24  QPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 25.0 bits (52), Expect = 0.35
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 4/18 (22%)
 Frame = -2

Query: 265 WDTKY----PPALLGWNI 224
           W+ +Y    PP LLGWN+
Sbjct: 8   WEARYLPAGPPRLLGWNV 25


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
 Frame = +2

Query: 308 NARKYDLHPDGLPNH----L*DQALQHLHRLTQI 397
           NA+K   H   +PNH      D+ L ++ +LT +
Sbjct: 96  NAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLV 129


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +1

Query: 328 TPRWTAQPPVRPSTPTPASA 387
           TP   A PP  PS+  P SA
Sbjct: 337 TPPKPAPPPPPPSSSGPDSA 356


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = +1

Query: 250 DTLCPTITXWHN 285
           D LC T+  WH+
Sbjct: 464 DALCNTLHHWHH 475


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 7.6
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = +2

Query: 23   WSQQRFWIRM 52
            W+++RFW R+
Sbjct: 1191 WNEKRFWERL 1200



 Score = 20.6 bits (41), Expect = 7.6
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 382  SAYANMQPPYRPPP 423
            +A+   QPP  PPP
Sbjct: 1348 TAWRQQQPPPPPPP 1361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,475
Number of Sequences: 438
Number of extensions: 3715
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10997463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)