Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K13
         (208 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    23   5.5  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   7.3  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    23   7.3  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    22   9.6  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    22   9.6  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    22   9.6  

>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -2

Query: 207 LFIYRTDHSLFQQIKALFIYFLINVDDFFDVY 112
           L + ++  SL+  + +L  YF ++  DFF  +
Sbjct: 414 LQLLQSSQSLYAHLYSLKHYFFLDQSDFFTTF 445


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -2

Query: 174 QQI-KALFIYFLINVDDFF 121
           QQI K + +YF I +DDF+
Sbjct: 425 QQIYKVILLYFSILMDDFY 443


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 123 KSHLRLLKNK*TKPLFVETN 182
           K+HLRLL +K +     ETN
Sbjct: 479 KNHLRLLASKNSDKALAETN 498


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
           Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 183 SLFQQIKALFIYFLINVDDFFD 118
           SL+Q+ K  FI++L ++ D  D
Sbjct: 42  SLYQEKKEGFIWYLNHLSDLLD 63


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 46  CRHDYVLNIVLSVI*MFLSF 105
           CRH+  L +VLS+I   LSF
Sbjct: 329 CRHELELYLVLSII--LLSF 346


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 43  ICRHDYVLNIVLSVI 87
           IC H Y+L + +SVI
Sbjct: 408 ICLHAYLLELTISVI 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 765,370
Number of Sequences: 5004
Number of extensions: 12105
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 2,362,478
effective HSP length: 48
effective length of database: 2,122,286
effective search space used: 42445720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)