Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K13
         (208 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical pr...    26   4.2  
AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical ...    25   5.6  
AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage...    25   5.6  

>Z77656-1|CAB01141.2|  350|Caenorhabditis elegans Hypothetical
           protein F07B10.2 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 70  IVLSVI*MFLSFIRINIEKVIYVY 141
           IVL +  MF SF+ I ++ +I++Y
Sbjct: 48  IVLCIFTMFYSFVEIMLQPLIHIY 71


>Z77662-7|CAB01197.1|  349|Caenorhabditis elegans Hypothetical
           protein F47B8.7 protein.
          Length = 349

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +1

Query: 58  YVLNIVLSVI*MFLSFIRINIE 123
           YVL ++LS++ M L  I+IN++
Sbjct: 227 YVLTLILSILVMILCTIKINLK 248


>AL021482-3|CAA16340.3| 1499|Caenorhabditis elegans Hypothetical
           protein Y39A1B.3 protein.
          Length = 1499

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 207 LFIYRTDHSLFQQIKALFIYFLINVDD 127
           LF    D SL++ I+ LF Y ++  DD
Sbjct: 916 LFKIHQDDSLWKSIEKLFFYEIMKADD 942


>AF177199-1|AAK81894.1| 1455|Caenorhabditis elegans mutant dosage
           compensation protein protein.
          Length = 1455

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 207 LFIYRTDHSLFQQIKALFIYFLINVDD 127
           LF    D SL++ I+ LF Y ++  DD
Sbjct: 872 LFKIHQDDSLWKSIEKLFFYEIMKADD 898


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,338,166
Number of Sequences: 27780
Number of extensions: 67890
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 12,740,198
effective HSP length: 48
effective length of database: 11,406,758
effective search space used: 228135160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)