Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K12
         (161 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0256 - 2688172-2688786,2690779-2690857,2691567-2691652,269...    25   8.3  

>10_01_0256 -
           2688172-2688786,2690779-2690857,2691567-2691652,
           2693046-2693113,2695175-2695244,2696191-2696320,
           2696924-2697906
          Length = 676

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -2

Query: 139 IFLVFSKCSCYYLLIGDWL*TAFCLVKISKHKTLYL 32
           + L   + SCY+L+    +    CLVK + HK L+L
Sbjct: 130 VLLGCCRFSCYFLVYNP-ITGKRCLVKAASHKRLHL 164


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,878
Number of Sequences: 37544
Number of extensions: 34619
Number of successful extensions: 23
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)