Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K12
         (161 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   1.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   1.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              19   5.6  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    19   7.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    18   9.8  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    18   9.8  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    18   9.8  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 148 MKHIFLVFSKCSCYYLLIGDW 86
           M  +F+      C  LLIG W
Sbjct: 272 MASVFMRIFNLICMMLLIGHW 292


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -2

Query: 148 MKHIFLVFSKCSCYYLLIGDW 86
           M  +F+      C  LLIG W
Sbjct: 240 MASVFMRIFNLICMMLLIGHW 260


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 148 MKHIFLVFSKCSC 110
           MK I L+F  C C
Sbjct: 1   MKTIVLIFGFCVC 13


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -2

Query: 160 CLY*MKHIFLVFSKCSCYYL--LIGDWL*TAFCLVKISKHKTL 38
           C Y M   +++FS    ++L  L+  ++      V  S+H+ L
Sbjct: 190 CSYNMDSSYVIFSAMGSFFLPMLVMLYVYGRISCVIASRHRNL 232


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 106 YLLIGDWL 83
           YLL+G W+
Sbjct: 96  YLLLGKWI 103


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 106 YLLIGDWL 83
           YLL+G W+
Sbjct: 96  YLLLGKWI 103


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 18.2 bits (35), Expect = 9.8
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 106 YLLIGDWL 83
           YLL+G W+
Sbjct: 96  YLLLGKWI 103


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,041
Number of Sequences: 438
Number of extensions: 426
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 33
effective length of database: 131,889
effective search space used:  2637780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)