Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K09
         (370 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    31   0.043
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.23 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    25   4.9  
SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   6.5  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    24   6.5  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    24   8.6  

>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 31.5 bits (68), Expect = 0.043
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 1/76 (1%)
 Frame = +3

Query: 90  TLPGPGITEPQALLVEALITFVLVLVVQGVCD-ARRIDLNGSAPLAIGLSITACHAACIP 266
           T P P +T   A   E + T VLV  +  + D        G     +GL I A   A   
Sbjct: 435 TNPKPYVTWRNAFFDEFIGTAVLVGCLFAILDDTNSPPTQGMTAFIVGLLIAAIGMALGY 494

Query: 267 ITGSSMNPARSFGPAL 314
            T  ++NPAR  GP +
Sbjct: 495 QTSFTLNPARDLGPRM 510


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.1 bits (62), Expect = 0.23
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = -1

Query: 109  IPGPGKVMPKVPTLSSGIASLMKAAPATAPKDPRAE 2
            +P P    P VP  SSGI  + K A    P  P +E
Sbjct: 1161 VPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSE 1196


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
          Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 91 VMPKVPTLSSGIASLMKAAPATAPKDP 11
          +MP+VP + +G+  ++   P  AP  P
Sbjct: 13 MMPQVPMVGNGVPYVVPIQPVFAPLPP 39


>SPBC15D4.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 272 WFKHEPGAFVRTCSGYGTLDCAL 340
           +F+H   A+V+  + +GT+ CAL
Sbjct: 134 FFQHSIPAYVQLTNNHGTILCAL 156


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +1

Query: 157  WFWSYKECVTHDA*ISMDQRPSPLVLALQPVMLLAFLSLVQA*TRRVRSDL 309
            W  +  +C+ +    S   RP+PL + LQ   +  F SL+ A ++ +   L
Sbjct: 1541 WLGTSPQCIFN---FSPKDRPNPLTIHLQSFSITHFPSLMLAMSKPIYRSL 1588


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +3

Query: 327 WTAHWVYWVC 356
           W  +WV+W C
Sbjct: 23  WAKNWVFWTC 32


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,293
Number of Sequences: 5004
Number of extensions: 27061
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)