Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K07
         (334 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    26   1.3  
SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces...    25   2.3  
SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces pombe...    25   2.3  
SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces pomb...    25   2.3  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    25   4.0  
SPAC25H1.06 |||histone acetyltransferase complex subunit |Schizo...    24   7.0  

>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 26.2 bits (55), Expect = 1.3
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 187 QFYEYGLFKKFKK--ISHEPGGDNIYLHFQVDNVHGSSVA 300
           Q ++Y  FK+ K+  ++H  G DN++    +  + G ++A
Sbjct: 701 QIHDYEKFKQLKRFFVAHGTGDDNVHFQHSMHLMDGLNLA 740


>SPBC8D2.03c |hhf2|ams3, h4.2|histone H4 h4.2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSI 92
           R  +TYT H+K  TV +  +VYS+
Sbjct: 68  RDAVTYTEHAKRKTVTSLDVVYSL 91


>SPBC1105.12 |hhf3|h4.3|histone H4 h4.3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSI 92
           R  +TYT H+K  TV +  +VYS+
Sbjct: 68  RDAVTYTEHAKRKTVTSLDVVYSL 91


>SPAC1834.03c |hhf1|h4.1|histone H4 h4.1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSI 92
           R  +TYT H+K  TV +  +VYS+
Sbjct: 68  RDAVTYTEHAKRKTVTSLDVVYSL 91


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 24.6 bits (51), Expect = 4.0
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +2

Query: 71   LLYCIFYMYFSTI*NIYASIEPRQE 145
            LLY  F MYFST     AS  P  +
Sbjct: 1341 LLYMFFQMYFSTFGQAVASACPNAQ 1365


>SPAC25H1.06 |||histone acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 131 QYLHKYFKWLKNTYRIYNTVI 69
           Q    +F+W KN+  +YN +I
Sbjct: 19  QISEDHFRWKKNSKHLYNLLI 39


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,294,165
Number of Sequences: 5004
Number of extensions: 19738
Number of successful extensions: 51
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)