Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K07
         (334 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386...    28   2.1  
08_01_0966 + 9751198-9751530,9752182-9752337,9753145-9753240,975...    26   8.5  
06_03_1194 + 28305388-28305472,28305603-28305682,28305771-283058...    26   8.5  
03_02_0386 + 8009884-8010133,8010274-8010338,8010545-8010658,801...    26   8.5  

>11_06_0607 +
           25437897-25438046,25438180-25438236,25438522-25438602,
           25438720-25438777,25438888-25438991,25439064-25439115,
           25439232-25439281,25440279-25440443,25440531-25440603,
           25440714-25440846,25441146-25441203,25441411-25441458,
           25441593-25441676,25441803-25441868,25442419-25442502
          Length = 420

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 218 LKKSHTSLAAITFTYISKLTTFTVRVLPGSKWSP 319
           L++  TS+ A  F Y SK T+ T  V+    W P
Sbjct: 382 LEEMATSVGAAKFEYYSKNTSITDAVIGSEHWHP 415


>08_01_0966 +
           9751198-9751530,9752182-9752337,9753145-9753240,
           9753599-9753719,9754027-9754196
          Length = 291

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 199 YGLFKKFKKISHEPGGDNIYLHFQVDN 279
           Y L  K KK++ E G  ++Y+H  ++N
Sbjct: 222 YALVDKSKKLAREWGITDLYVHVAINN 248


>06_03_1194 +
           28305388-28305472,28305603-28305682,28305771-28305839,
           28305936-28305993,28306082-28306134,28306229-28306271,
           28306360-28306421,28306914-28307027,28307183-28307285,
           28307377-28307426,28308138-28308266,28308340-28308591,
           28308684-28308763,28309040-28309166,28309247-28309390,
           28309849-28310034
          Length = 544

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +1

Query: 208 FKKFKKISHEPGGDNIYLHFQVDNVHGSSVARFEMV 315
           F K ++  H P GD  Y+    D + G S+ +FE +
Sbjct: 481 FAKVQREQHLPAGDFPYVEHFRDVLGGYSIDKFEKI 516


>03_02_0386 +
           8009884-8010133,8010274-8010338,8010545-8010658,
           8010736-8010895,8010975-8011093,8011209-8011635,
           8011834-8012057,8012863-8012973,8013056-8013188,
           8013259-8013365,8013430-8013444,8013482-8013571,
           8013855-8013917,8013973-8014053,8014136-8014208,
           8014312-8014367,8014460-8014554,8014649-8014683,
           8015449-8015525
          Length = 764

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = +2

Query: 203 GYLKNLKK--SHTSLAAITFTYISKLTTFTVRVLPGSK 310
           G LK  K+  +HT+LA  T++ +S+  +F   + PG +
Sbjct: 344 GCLKTYKEIETHTALAGSTYSELSEPPSFEAFLCPGER 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,151,891
Number of Sequences: 37544
Number of extensions: 114074
Number of successful extensions: 209
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 209
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 459426840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)