Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K07
         (334 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           23   0.73 
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    20   9.1  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.1  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 23.4 bits (48), Expect = 0.73
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 21  RVLLTYTLHSKTPTVLNYCIVYSICI 98
           R  +TYT H+K  TV    +VY++ I
Sbjct: 68  RDAVTYTEHTKRKTVTAMDVVYALKI 93


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 289 NRERCQLGNVGKC 251
           NR RCQ   + KC
Sbjct: 67  NRNRCQYCRLKKC 79


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 289 NRERCQLGNVGKC 251
           NR RCQ   + KC
Sbjct: 116 NRNRCQYCRLKKC 128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,016
Number of Sequences: 438
Number of extensions: 1464
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7466580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)