Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K06
         (383 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   132   1e-32
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    45   4e-06
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    44   8e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    27   0.76 
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    27   0.76 
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    27   1.3  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    26   2.3  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   3.1  
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    25   3.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    25   5.4  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    24   7.1  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    24   9.4  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    24   9.4  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  132 bits (320), Expect = 1e-32
 Identities = 60/112 (53%), Positives = 82/112 (73%)
 Frame = -1

Query: 380 K*AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE* 201
           K A+LV+IA DVDPIELV+FLPALC+KMGVPY IVK K+RLG ++H+KT   +A+T V  
Sbjct: 146 KKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVKNKARLGTVIHQKTAAVLAVTEVRE 205

Query: 200 GDRAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREI 45
            D+   + +V A+  NF+ +Y+E RR WGGG++G K+ A +AK  KA A  +
Sbjct: 206 EDKNELASIVSAVDANFSAKYDESRRKWGGGIMGGKTQALLAKRAKAAAATV 257


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 45.2 bits (102), Expect = 4e-06
 Identities = 27/80 (33%), Positives = 40/80 (50%)
 Frame = -1

Query: 368 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE*GDRA 189
           LV++A D+ P++++  +P LC    VPY     K  LG   + K  TS  +  V  G + 
Sbjct: 72  LVILAGDISPMDVISHIPVLCEDNNVPYLYTVSKELLGEASNTKRPTSCVMI-VPGGKKK 130

Query: 188 AFSKVVEAIKTNFNERYEEL 129
             SKV E     + E YEE+
Sbjct: 131 DMSKVEE-----YKESYEEI 145


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 44.0 bits (99), Expect = 8e-06
 Identities = 18/40 (45%), Positives = 26/40 (65%)
 Frame = -1

Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 255
           ++ +V+A D +PIE++L LP LC    VPY  V  K+ LG
Sbjct: 48  SEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALG 87


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 41  VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 142
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 41  VLSHAPSPSPAWRYARSTCYRGRHRPSVCVTLRN 142
           ++ H PSP  A +Y   T Y G       V +RN
Sbjct: 338 IVLHLPSPKTAQQYRAETLYEGPMDDECAVGIRN 371


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 26.6 bits (56), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 156 QLQ*ALRRVTQTLGRWRPR*QVERAYRQAGE 64
           Q++  L R+ Q +G +  R ++ERA RQA E
Sbjct: 249 QIRFNLERICQDIGNFDVRSRIERAARQARE 279


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = -1

Query: 182 SKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIA 42
           +K+ EA K  FNE  E+L    GGG L  K+    A+L+  +  + A
Sbjct: 23  AKINEA-KKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAA 68


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +1

Query: 106 TPPPQCLRNSS*RSLKLVLIASTTFEKAARSPYST 210
           TPP  C RN +  S K++       ++ +R  Y T
Sbjct: 745 TPPSGCSRNHTSNSYKIIATNEMNRQQGSRDSYIT 779


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 259 NRDLPFTIQYGTPILRQSAGRKSTSSIGS 345
           + +LPF      P++R S GRK + S+G+
Sbjct: 535 SNELPFKEIILHPLVRDSEGRKMSKSLGN 563


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = -2

Query: 322  SCQR-FAVRWESRTVS*RVNHDWVRLYTVRL 233
            SC++ F+  WES        H WVRL   RL
Sbjct: 2232 SCEKEFSKIWESMRYLILFKHAWVRLSVSRL 2262


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 78  DTRVRLVTEDATAPVSA*LFVTLIEVG 158
           DT +R   +    PV+   FV+L EVG
Sbjct: 278 DTEIRKAEDQTAVPVAKFSFVSLQEVG 304


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
           Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 231 ASLTVYKRTQS*FTLHDTVRDSHLTAKRWQEEHKF 335
           +S T +  + S F  HDT   S+      QE+H +
Sbjct: 617 SSSTAFHLSNSLFETHDTTGTSNFAVSIQQEKHYY 651


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 251 AHPIVIYPSRYSTGLPSYGKALAGRAQVRLGL 346
           A+PI +  S +ST  P+YG AL        GL
Sbjct: 260 ANPIYLDDSYWSTVKPTYGLALECEGDTCSGL 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,996
Number of Sequences: 5004
Number of extensions: 30164
Number of successful extensions: 89
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)