Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K06
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 158 1e-39
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 158 2e-39
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 116 5e-27
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 44 5e-05
10_01_0125 + 1509642-1509759,1509847-1509950,1510693-1510824,151... 41 4e-04
02_05_0610 - 30342105-30342266,30343024-30343129,30343788-303438... 40 5e-04
03_02_0321 + 7443835-7443837,7443957-7444077,7444168-7444271,744... 40 9e-04
11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610 30 0.72
03_05_0261 - 22470565-22470714,22472101-22474270,22474368-224745... 29 1.3
05_03_0629 + 16376575-16376689,16376792-16376839,16376927-163770... 29 1.7
11_01_0750 - 6315126-6315896,6316371-6316784 28 2.9
08_01_0139 + 1105857-1107008,1107124-1107328,1107583-1107768,110... 27 3.8
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275... 27 3.8
02_04_0475 + 23229046-23229480,23230062-23231205,23232187-232323... 27 3.8
07_01_0875 - 7265529-7265588,7265681-7265746,7266008-7266293,726... 27 5.1
07_01_0360 + 2646279-2646283,2647113-2647398,2648043-2648108,264... 27 5.1
06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991 27 5.1
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890... 27 5.1
07_03_0768 + 21368058-21368624 27 6.7
09_04_0551 - 18488584-18490017 26 8.9
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647... 26 8.9
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 158 bits (384), Expect = 1e-39
Identities = 71/113 (62%), Positives = 94/113 (83%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE*GD 195
AQLVVIAHDVDPIELV++LPALCRKM VPYCIVKGK+RLG++VH+KT + + LT V+ D
Sbjct: 144 AQLVVIAHDVDPIELVVWLPALCRKMEVPYCIVKGKARLGSIVHKKTASVLCLTTVKNED 203
Query: 194 RAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQK 36
+ FSK++EAIK NFN++++E+R+ WGGGV+G+KS A+ EK A+E AQ+
Sbjct: 204 KLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 256
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 158 bits (383), Expect = 2e-39
Identities = 69/113 (61%), Positives = 95/113 (84%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE*GD 195
AQLVVIAHDVDPIELV++LPALCRKM +PYCIVKGK+RLG++VH+KT + + LT V+ D
Sbjct: 129 AQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASVLCLTTVKNED 188
Query: 194 RAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQK 36
+ FSK++EAIK+NFN++++E+R+ WGGG++G+KS A+ EK A+E AQ+
Sbjct: 189 KLEFSKILEAIKSNFNDKFDEVRKKWGGGIMGSKSQAKTKAREKLLAKEAAQR 241
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 116 bits (280), Expect = 5e-27
Identities = 59/113 (52%), Positives = 80/113 (70%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE*GD 195
AQLVVIAHDVDPIELV++LPALCRKM +VH+KT + + LT V+ D
Sbjct: 128 AQLVVIAHDVDPIELVVWLPALCRKM--------------EIVHKKTASVLCLTTVKNED 173
Query: 194 RAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQK 36
+ FSK++EAIK NFN++++E+R+ WGGGV+G+KS A+ EK A+E AQ+
Sbjct: 174 KLEFSKILEAIKANFNDKFDEVRKKWGGGVMGSKSQAKTKAREKLLAKEAAQR 226
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 43.6 bits (98), Expect = 5e-05
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Frame = -1
Query: 368 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTSVALTNVE*GD 195
L +IA ++ PI+++ +P LC + +PY V K L R TC + LT G+
Sbjct: 63 LCIIAGNISPIDVITHVPILCEEANIPYVYVPSKEDLATAGTTKRPTCCVLVLTKPAKGE 122
Query: 194 RAAFSKVVEAIKTNFNERYEELRRHWGG 111
V E +KT++++ E+ G
Sbjct: 123 LE--EDVKEKLKTDYDQVMSEVAEAGNG 148
>10_01_0125 +
1509642-1509759,1509847-1509950,1510693-1510824,
1510936-1510962
Length = 126
Score = 40.7 bits (91), Expect = 4e-04
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 255
A+ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 49 AEFVVMAADAEPLEILLHLPLLAEDKNVPYVFVPSKQALG 88
>02_05_0610 -
30342105-30342266,30343024-30343129,30343788-30343857,
30343978-30344092
Length = 150
Score = 40.3 bits (90), Expect = 5e-04
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Frame = -1
Query: 368 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRL--GALVHRKTCTSVALTNVE*GD 195
L VIA ++ PI+++ +P LC + +PY V K L R TC + +T G+
Sbjct: 63 LCVIAGNISPIDVITHVPILCEEANIPYIYVPSKEDLATAGTTKRPTCCVLVMTKPAKGE 122
Query: 194 RAAFSKVVEAIKTNFNERYEEL 129
+V E +K++++ E+
Sbjct: 123 --INEEVKEKLKSDYDHVVAEV 142
>03_02_0321 +
7443835-7443837,7443957-7444077,7444168-7444271,
7445056-7445187,7445285-7445311
Length = 128
Score = 39.5 bits (88), Expect = 9e-04
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 255
++ VV+A D +P+E++L LP L VPY V K LG
Sbjct: 51 SEFVVMAADTEPLEILLHLPLLAEDKNVPYVFVPSKQALG 90
>11_01_0321 + 2415799-2415972,2418060-2418351,2418757-2419610
Length = 439
Score = 29.9 bits (64), Expect = 0.72
Identities = 26/99 (26%), Positives = 41/99 (41%)
Frame = +1
Query: 55 AFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPYSTFVRATLVQ 234
A AF L + A LL PP + + R ++ + R P + A
Sbjct: 9 ALAFF-LLVAAASLLSLPPPSLAVTSPYVRPKPRATLSLLKDDDDGRKPEQVHISAVGSD 67
Query: 235 VLRCTSAPNRDLPFTIQYGTPILRQSAGRKSTSSIGSTS 351
+R T D P T++YGT ++G+ S+ GST+
Sbjct: 68 KMRVTWITGGDAPATVEYGT-----TSGQYPFSATGSTN 101
>03_05_0261 -
22470565-22470714,22472101-22474270,22474368-22474540,
22474763-22474924,22476420-22476560
Length = 931
Score = 29.1 bits (62), Expect = 1.3
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -1
Query: 143 RYEELRRHWGGGVLGNKSNARIAKLEKAK 57
R +EL WGG LGN ++K+EK K
Sbjct: 854 REKELMDAWGGVGLGNSMKPHLSKIEKDK 882
>05_03_0629 +
16376575-16376689,16376792-16376839,16376927-16377012,
16377791-16377878,16378387-16378472,16378604-16378690,
16379111-16379293,16379387-16379470,16379590-16379651,
16379752-16379827,16379906-16379968,16380060-16380141,
16380840-16380916,16381502-16381549,16381681-16381743
Length = 415
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = +1
Query: 43 AISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSP 201
A + + A SS R L R+PPP LR + R ++V A T E A +P
Sbjct: 8 AAASSTAASSATFRPPLLSLRSPPPSSLRLNRRRHFQVVRAAETDKETKANAP 60
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 27.9 bits (59), Expect = 2.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 246 YKRTQS*FTLHDTVRDSHLTAKRWQEEHKFDWVYVMSDDH 365
Y RT+ F +HD + L K+ + E KF + DDH
Sbjct: 214 YDRTRL-FAVHDNFKVIKLPYKQGKNERKFSMYIFLPDDH 252
>08_01_0139 +
1105857-1107008,1107124-1107328,1107583-1107768,
1107924-1108133,1108552-1109186
Length = 795
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 305 RKMGVPYCIVKGKSRLGALVHRKTCTSV 222
R + P I+K +R+ A +H +TC+SV
Sbjct: 87 RLVNSPINIIKANARVKAALHNQTCSSV 114
>03_05_0776 +
27625122-27625415,27627226-27627273,27627455-27627514,
27627633-27627802,27627901-27627973,27628096-27628161,
27628262-27628345,27628681-27628758,27629009-27629092,
27629835-27630137,27630227-27630397,27630971-27631161,
27631284-27631686,27632246-27632497,27632577-27633077,
27633181-27633278,27633400-27633499,27633722-27633867,
27633973-27634138
Length = 1095
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +1
Query: 265 DLPFTIQYGTPILRQSAGRKSTSSIGS 345
D+PF Y P++R + GRK + S+G+
Sbjct: 670 DVPFEKVYLHPMIRDAHGRKMSKSLGN 696
>02_04_0475 +
23229046-23229480,23230062-23231205,23232187-23232334,
23232776-23234225
Length = 1058
Score = 27.5 bits (58), Expect = 3.8
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = +1
Query: 91 DLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARSPYSTFVRATLVQVLRCTSAP 258
DLL + PP L+ + AS A+R PY VR +V + RC P
Sbjct: 760 DLLRKLQPPDTLKVLQIQGYMATSFASWMMNLASRLPY--LVRIEMVDLPRCEYLP 813
>07_01_0875 -
7265529-7265588,7265681-7265746,7266008-7266293,
7267138-7267142
Length = 138
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 255
AQL V+A D D + V + ALC + V V LG
Sbjct: 54 AQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>07_01_0360 +
2646279-2646283,2647113-2647398,2648043-2648108,
2648199-2648258
Length = 138
Score = 27.1 bits (57), Expect = 5.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 255
AQL V+A D D + V + ALC + V V LG
Sbjct: 54 AQLCVLAEDCDQPDYVKLVKALCAEHNVHLVTVPSAKTLG 93
>06_03_0858 + 25448807-25448815,25451253-25452038,25452956-25452991
Length = 276
Score = 27.1 bits (57), Expect = 5.1
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = +2
Query: 53 APSPSPAWRYARSTCYRGRHRPSVCVTLRNA 145
APSPSP A + GRH V R+A
Sbjct: 153 APSPSPQMHAASRRHHHGRHHQQVAPKARSA 183
>06_01_1087 +
8901950-8902102,8902960-8903996,8904438-8904586,
8905437-8905690,8905785-8908799,8908889-8909001,
8909975-8910164,8910399-8910512,8910591-8910698,
8910941-8911073,8911206-8911408,8911626-8911826
Length = 1889
Score = 27.1 bits (57), Expect = 5.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 40 CAISRAFAFSSLAIRAFDLLPRTPPPQCLRNSS*RSLKLVLIASTTFEKAARS-PYSTF 213
C++ A F S D +P+ PP + +S + +VL+ S + S P S F
Sbjct: 425 CSVFNAITFVSTLASGSDQIPKEPPIEKTLRASIAEISVVLLFSDEMDAGNSSVPISQF 483
>07_03_0768 + 21368058-21368624
Length = 188
Score = 26.6 bits (56), Expect = 6.7
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -3
Query: 255 CACT-P*DLHERRSYK-CGVRRPCRLLEGSG 169
CAC ++H++ Y G RRPCR G G
Sbjct: 121 CACARAMEVHQQEEYVVAGRRRPCRRRRGKG 151
>09_04_0551 - 18488584-18490017
Length = 477
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 43 AISRAFAFSSLAIRAFDLLPRTPPPQCL 126
A++RA + S A +F +LPR P P L
Sbjct: 52 AVARAVSSKSSATVSFHMLPRIPDPPSL 79
>01_01_0829 +
6471032-6471870,6472490-6472685,6472772-6472956,
6473206-6473539,6473629-6473833,6474927-6475033,
6475117-6475269
Length = 672
Score = 26.2 bits (55), Expect = 8.9
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Frame = +2
Query: 23 RLSPVSVLSHAPS---PSPAWRYARSTCYRGRHRPSVCVTLRNAH*SWS**LPLPS 181
RLSPVS L+H+ S P+P+ S P+ + R +H S +PLPS
Sbjct: 36 RLSPVSPLTHSSSSKLPTPSSSSGSSGSLSVSRAPASALASRRSH---SGEIPLPS 88
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,249,203
Number of Sequences: 37544
Number of extensions: 239921
Number of successful extensions: 820
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 808
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -