Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K06
(383 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 144 1e-35
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 144 1e-35
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 45 2e-05
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 37 0.006
AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation... 28 2.6
Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical pr... 27 3.4
Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 26 7.9
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 26 7.9
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 26 7.9
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 26 7.9
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 144 bits (350), Expect = 1e-35
Identities = 63/112 (56%), Positives = 90/112 (80%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE*GD 195
AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL +V D
Sbjct: 153 AQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPED 212
Query: 194 RAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQ 39
++A +K+VE + NF+ER+EE+R+HWGGGV+ KS+A+ K+E+A+AR++ +
Sbjct: 213 KSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 264
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 144 bits (350), Expect = 1e-35
Identities = 63/112 (56%), Positives = 90/112 (80%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLGALVHRKTCTSVALTNVE*GD 195
AQLV+IAHDV+P+E+VL LPALCRK VPY I+KGK+ LG +V RKT +VAL +V D
Sbjct: 133 AQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKASLGTVVRRKTTAAVALVDVNPED 192
Query: 194 RAAFSKVVEAIKTNFNERYEELRRHWGGGVLGNKSNARIAKLEKAKAREIAQ 39
++A +K+VE + NF+ER+EE+R+HWGGGV+ KS+A+ K+E+A+AR++ +
Sbjct: 193 KSALNKLVETVNNNFSERHEEIRKHWGGGVMSAKSDAKKLKIERARARDLGK 244
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 45.2 bits (102), Expect = 2e-05
Identities = 17/40 (42%), Positives = 28/40 (70%)
Frame = -1
Query: 374 AQLVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG 255
++++V+A D +P+E++L LP LC VPY V+ K+ LG
Sbjct: 51 SEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALG 90
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 36.7 bits (81), Expect = 0.006
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Frame = -1
Query: 368 LVVIAHDVDPIELVLFLPALCRKMGVPYCIVKGKSRLG-ALVHRKTCTSVALTNVE*GD- 195
+ ++A +V PI++ +P +C + +PY + + +LG A+ HR+ S+ + GD
Sbjct: 87 ICILAGNVSPIDVYSHIPGICEEKEIPYVYIPSREQLGLAVGHRR--PSILIFVKPSGDF 144
Query: 194 RAAFSKVVEAIK 159
+ + +V EA++
Sbjct: 145 KELYDEVAEALR 156
>AF016452-10|AAB66019.1| 620|Caenorhabditis elegans Gastrulation
defective protein 1 protein.
Length = 620
Score = 27.9 bits (59), Expect = 2.6
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 160 LIASTTFEKAARSPYSTFVRATLVQVLRCTSAPNRDLPFTIQYGTPI 300
L+ T E A +S F V V TS+PN+D P T+Q+ P+
Sbjct: 361 LLVKTGLENAFKSTDCGFSPRAEV-VFTGTSSPNKDTPGTLQFFDPM 406
>Z68220-5|CAA92490.2| 282|Caenorhabditis elegans Hypothetical
protein T20D3.8 protein.
Length = 282
Score = 27.5 bits (58), Expect = 3.4
Identities = 13/21 (61%), Positives = 16/21 (76%)
Frame = +2
Query: 239 YGVQAHPIVIYPSRYSTGLPS 301
YGV+A P+V YP+ STGL S
Sbjct: 155 YGVKA-PVVSYPTSVSTGLSS 174
>Z82090-3|CAD98728.1| 1516|Caenorhabditis elegans Hypothetical
protein ZK337.1c protein.
Length = 1516
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 299 SYGKALAGRAQVRLGLRHER*PQAVPT 379
+YGK +AG+A+V L L R VPT
Sbjct: 269 TYGKGVAGKAKVSLELPWHRWHAMVPT 295
>Z82090-2|CAB05007.2| 1501|Caenorhabditis elegans Hypothetical
protein ZK337.1b protein.
Length = 1501
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 299 SYGKALAGRAQVRLGLRHER*PQAVPT 379
+YGK +AG+A+V L L R VPT
Sbjct: 269 TYGKGVAGKAKVSLELPWHRWHAMVPT 295
>Z82090-1|CAB05006.1| 1508|Caenorhabditis elegans Hypothetical
protein ZK337.1a protein.
Length = 1508
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 299 SYGKALAGRAQVRLGLRHER*PQAVPT 379
+YGK +AG+A+V L L R VPT
Sbjct: 269 TYGKGVAGKAKVSLELPWHRWHAMVPT 295
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 79 IRAFDLLPRTPPPQCLRN 132
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 79 IRAFDLLPRTPPPQCLRN 132
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 79 IRAFDLLPRTPPPQCLRN 132
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 79 IRAFDLLPRTPPPQCLRN 132
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 26.2 bits (55), Expect = 7.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 79 IRAFDLLPRTPPPQCLRN 132
+RA L+PR PPP+ RN
Sbjct: 237 MRALFLIPRNPPPKLKRN 254
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -1
Query: 347 VDPIELVLFLPALCRKMGVPYCIVKGKS 264
+DP+ ++L LPAL R++ P +G S
Sbjct: 294 LDPLAIILLLPALRRRLPNPIRKYRGNS 321
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,844,623
Number of Sequences: 27780
Number of extensions: 177237
Number of successful extensions: 440
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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