Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K04
         (284 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    73   1e-14
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    68   3e-13
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    64   5e-12
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa...    29   0.13 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   0.92 
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    25   2.1  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    24   3.7  
SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit Mcm5|Schi...    23   8.5  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    23   8.5  

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.5 bits (170), Expect = 1e-14
 Identities = 32/51 (62%), Positives = 45/51 (88%)
 Frame = +2

Query: 77  KASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
           K SP+A+D+E +LS+VGIEA++E++E +ISELNGKN+EELI AG  KLS++
Sbjct: 15  KQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTV 65


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 67.7 bits (158), Expect = 3e-13
 Identities = 29/51 (56%), Positives = 45/51 (88%)
 Frame = +2

Query: 77  KASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
           K SP+A+D+E +LS+VGIEA+SE++E +I+ELNGK+++ELI AG  KL+++
Sbjct: 15  KDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATV 65


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 63.7 bits (148), Expect = 5e-12
 Identities = 27/51 (52%), Positives = 44/51 (86%)
 Frame = +2

Query: 77  KASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
           K SP+A+D+E +LS+VGIE++SE++E +I EL+GK+++ELI AG  KL+++
Sbjct: 15  KNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATV 65


>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
           Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 527

 Score = 29.1 bits (62), Expect = 0.13
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +2

Query: 104 EKILSSVGIEADSEKLEKVISELNGKNVEELI 199
           E +L S G+E  S+   KV S +N K+VEE I
Sbjct: 297 ELVLLSEGVEMYSDDWAKVASHVNTKSVEECI 328


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.2 bits (55), Expect = 0.92
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 101  VEKILSSVGIEADSEKLEKVISELNG 178
            V++I   VG+E DSE  +  + E+ G
Sbjct: 1742 VDEIFGEVGVEKDSEDYKSNVKEIKG 1767


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 98  DVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSS 226
           DV++ LS +  EA    +       NG+ +EE++ A   KL +
Sbjct: 56  DVDQ-LSEIAAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEA 97


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 24.2 bits (50), Expect = 3.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +2

Query: 140 SEKLEKVISELNGKNVEELIE 202
           SE +E V+ ELN KN+E  ++
Sbjct: 24  SEIIEHVLEELNLKNIERRVK 44


>SPAC1B2.05 |mcm5|nda4, SPAC3F10.01|MCM complex subunit
           Mcm5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 77  KASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGR 211
           KAS A A     +  VGI+ DS    K     + +  EE +E  R
Sbjct: 274 KASGAVAIRNPYIRVVGIQMDSNDGSKSTPLFSEEEEEEFLEISR 318


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 23.0 bits (47), Expect = 8.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 228 MEESLPRPASINSSTFL 178
           + E+ P P+S+NSST L
Sbjct: 183 VSEAAPPPSSLNSSTVL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,540
Number of Sequences: 5004
Number of extensions: 11405
Number of successful extensions: 46
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 65671360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)