Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K04
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 58 8e-10
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 52 9e-08
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 49 5e-07
07_01_1001 - 8460467-8460799 40 4e-04
07_03_0321 + 16757414-16757743 39 7e-04
01_06_0098 - 26416768-26416998 30 0.33
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707... 28 1.3
12_01_0731 - 6516894-6517473,6517485-6519574 27 1.8
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166... 27 2.3
12_01_0993 - 10069179-10070057,10070708-10071049 26 5.4
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 26 5.4
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849... 26 5.4
06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,504... 25 7.1
12_01_0736 + 6582371-6585370 25 9.4
12_01_0718 + 6339982-6342981 25 9.4
12_01_0715 - 6230393-6231559,6233234-6234553 25 9.4
12_01_0708 - 6137865-6140909 25 9.4
03_06_0259 + 32712976-32714335,32714454-32714587,32714904-327151... 25 9.4
01_06_1102 - 34541341-34541561,34541691-34541769,34541880-345419... 25 9.4
01_06_0476 + 29614228-29614300,29614482-29615425 25 9.4
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 58.4 bits (135), Expect = 8e-10
Identities = 26/49 (53%), Positives = 39/49 (79%)
Frame = +2
Query: 83 SPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
SP+A D++ IL SVG+EA+ E+LE ++SEL GK++ E+I AGR K +S+
Sbjct: 17 SPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 51.6 bits (118), Expect = 9e-08
Identities = 23/50 (46%), Positives = 36/50 (72%)
Frame = +2
Query: 80 ASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
+SP A D+ IL SVG E D+ K+E ++S+++GK++ ELI GR K +S+
Sbjct: 16 SSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 49.2 bits (112), Expect = 5e-07
Identities = 22/49 (44%), Positives = 35/49 (71%)
Frame = +2
Query: 83 SPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
+P+A D+ IL SVG E D K+E ++S+L GK++ E+I +GR K +S+
Sbjct: 210 NPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGREKFASV 258
>07_01_1001 - 8460467-8460799
Length = 110
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 80 ASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLS 223
ASP DV IL +VG + D +KL + ++ GK++ E++ AG L+
Sbjct: 16 ASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSEMLA 63
>07_03_0321 + 16757414-16757743
Length = 109
Score = 38.7 bits (86), Expect = 7e-04
Identities = 18/48 (37%), Positives = 29/48 (60%)
Frame = +2
Query: 80 ASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLS 223
ASP DV IL +VG + D +KL + ++ GK++ E++ AG L+
Sbjct: 16 ASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSEMLA 63
>01_06_0098 - 26416768-26416998
Length = 76
Score = 29.9 bits (64), Expect = 0.33
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +2
Query: 86 PAAADVEKILSSVGIEADSEKLEKVISELNGKN 184
P V KI+ +V IEADS + + ++ L GK+
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>07_03_0809 -
21669632-21669637,21669871-21670131,21670573-21670752,
21671458-21672819
Length = 602
Score = 27.9 bits (59), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +2
Query: 83 SPAAADVEKILSSVGIEADSEKLEKVISELNGKNVE 190
SPA D+ L+ G E DS + ++S+LNG E
Sbjct: 50 SPATQDLLSKLNGSGGEGDSPATQDLLSKLNGSGGE 85
>12_01_0731 - 6516894-6517473,6517485-6519574
Length = 889
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +3
Query: 63 PCWAAKRPQLLLMSKRSSALWG 128
PCW +K PQLL++ +S+ G
Sbjct: 714 PCWMSKLPQLLVLVLKSNRFSG 735
>08_02_0909 -
22515326-22515418,22515992-22516150,22516583-22516658,
22517980-22518141,22518826-22519259,22519723-22521414
Length = 871
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 107 KILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSS 226
++LS GI++ S K + ++G N++EL AG +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713
>12_01_0993 - 10069179-10070057,10070708-10071049
Length = 406
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 114 RIFSTSAAAGDALPPNTA 61
R F++SAAAGDA P N +
Sbjct: 384 RAFNSSAAAGDAYPINVS 401
>11_01_0471 -
3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 98 DVEKILSSVGIEADSEKLEKVISELNGKNVEELI 199
DV + LSS ++ + L+ V+ L +NVEE++
Sbjct: 322 DVLRALSSPNVDVRRKVLDLVLDLLTPRNVEEVV 355
>04_03_0630 -
18182681-18182931,18183397-18183463,18184899-18184964,
18185057-18185178,18185263-18185425,18186082-18186329,
18186418-18186751,18186857-18187000,18187079-18187144
Length = 486
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 80 ASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAG 208
ASPAAA+++ + + I A ++ V +E+ + +E + G
Sbjct: 56 ASPAAAEMDTVTTMEAINAKIVSMDIVRAEIKAVDAQESLGGG 98
>06_01_0691 - 5040280-5040801,5041439-5041529,5042368-5042568,
5042649-5046148
Length = 1437
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/35 (28%), Positives = 19/35 (54%)
Frame = +2
Query: 86 PAAADVEKILSSVGIEADSEKLEKVISELNGKNVE 190
P A + +++S G ++ EKV++ L N+E
Sbjct: 1059 PTIATMHILMTSYGTSGHPDEAEKVLNSLKSSNLE 1093
>12_01_0736 + 6582371-6585370
Length = 999
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 63 PCWAAKRPQLLLMSKRSSALWG 128
PCW +K PQL ++ +S+ G
Sbjct: 726 PCWMSKLPQLQVLVLKSNRFIG 747
>12_01_0718 + 6339982-6342981
Length = 999
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 63 PCWAAKRPQLLLMSKRSSALWG 128
PCW +K PQL ++ +S+ G
Sbjct: 726 PCWMSKLPQLQVLVLKSNRFIG 747
>12_01_0715 - 6230393-6231559,6233234-6234553
Length = 828
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +3
Query: 63 PCWAAKRPQLLLMSKRSSALWG 128
PCW +K PQL ++ +S+ G
Sbjct: 653 PCWMSKLPQLQVLVLKSNKFIG 674
>12_01_0708 - 6137865-6140909
Length = 1014
Score = 25.0 bits (52), Expect = 9.4
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 63 PCWAAKRPQLLLMSKRSSALWG 128
PCW +K P+L +++ +S+ G
Sbjct: 742 PCWMSKLPKLQVLALKSNKFTG 763
>03_06_0259 +
32712976-32714335,32714454-32714587,32714904-32715144,
32715254-32715462,32715522-32715583,32715690-32715801,
32715916-32716208,32716400-32716520
Length = 843
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +3
Query: 63 PCWAAKRPQLLLMSKRSSALWG 128
P W + PQL ++S R+++L G
Sbjct: 171 PAWIGELPQLAVLSLRNNSLGG 192
>01_06_1102 -
34541341-34541561,34541691-34541769,34541880-34541929,
34542291-34542576
Length = 211
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -2
Query: 124 HRAEDLFDISSSWGRFAAQHGE 59
H+A + F +++SW + AA H E
Sbjct: 84 HKAAETFVLANSWRKAAAAHHE 105
>01_06_0476 + 29614228-29614300,29614482-29615425
Length = 338
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +2
Query: 86 PAAADVEKILSSVGIEADSEKL----EKVISELNGKNVEELIEAGRGKLSSM 229
P ++V ++ S GI DS ++ ++ L+G N+ +++ G G LSS+
Sbjct: 41 PGPSEVVQLYRSKGI--DSMRIYFADAAALNALSGSNIGLIMDVGNGNLSSL 90
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,879,515
Number of Sequences: 37544
Number of extensions: 88474
Number of successful extensions: 338
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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