Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K04
(284 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 49 5e-07
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 48 8e-07
AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical ... 28 1.2
AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical ... 27 1.6
Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical pr... 27 2.2
U40800-14|AAA81498.4| 727|Caenorhabditis elegans Hypothetical p... 27 2.2
Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical p... 26 3.8
Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical pr... 26 3.8
Z81104-5|CAE17892.1| 285|Caenorhabditis elegans Hypothetical pr... 26 3.8
AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic catio... 26 3.8
AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical ... 26 5.0
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p... 25 6.6
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr... 25 6.6
J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy ch... 25 6.6
Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical pr... 25 8.7
U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily ass... 25 8.7
AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical... 25 8.7
AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRN... 25 8.7
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 49.2 bits (112), Expect = 5e-07
Identities = 24/50 (48%), Positives = 34/50 (68%)
Frame = +2
Query: 80 ASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
A+P D++ ILS+VG++AD+E + V+S L GK VEELI G L S+
Sbjct: 16 ANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSAGLVSV 65
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 48.4 bits (110), Expect = 8e-07
Identities = 22/50 (44%), Positives = 32/50 (64%)
Frame = +2
Query: 80 ASPAAADVEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
ASP+A DV K+L + G++ D E V+ L GK + E+I G+ KLSS+
Sbjct: 16 ASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKVKLSSV 65
>AF125459-7|AAD12836.1| 971|Caenorhabditis elegans Hypothetical
protein Y25C1A.5 protein.
Length = 971
Score = 27.9 bits (59), Expect = 1.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = +2
Query: 98 DVEKILSSVGIEADSEKLEKVISELNGKNVEELI 199
D+ ++LSS G+E + L + ++ +NVE+++
Sbjct: 325 DILRVLSSPGLEVRKKTLSLALDLVSSRNVEDMV 358
>AF038621-4|AAK71387.2| 1064|Caenorhabditis elegans Hypothetical
protein M116.5 protein.
Length = 1064
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 11 VSCLSDLKNXXXXXXXXXXXXXKASPAAADVEKILS 118
V C+S+LKN +ASP AD +K +S
Sbjct: 1007 VGCVSNLKNSIVEPSSPSQSESRASPEVADRQKRIS 1042
>Z75712-1|CAB00040.1| 724|Caenorhabditis elegans Hypothetical
protein K04G2.3 protein.
Length = 724
Score = 27.1 bits (57), Expect = 2.2
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +2
Query: 101 VEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLSSM 229
+E +S++GI+ D ++ KV+S G ++ L + G S +
Sbjct: 195 IESKMSAMGIDDDKKRNSKVVSTAVGYKIQILNASAEGSTSDV 237
>U40800-14|AAA81498.4| 727|Caenorhabditis elegans Hypothetical
protein D2096.11 protein.
Length = 727
Score = 27.1 bits (57), Expect = 2.2
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 11 VSCLSDLKNXXXXXXXXXXXXXKASPAAADVEKILS 118
V C+S+LKN +ASP AD +K +S
Sbjct: 674 VGCVSNLKNSIVEPSSPSQSESRASPEVADRQKRVS 709
>Z83228-10|CAB05732.2| 585|Caenorhabditis elegans Hypothetical
protein F52F12.1a protein.
Length = 585
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Frame = +2
Query: 119 SVGIEADSEKLEKVISELNGK---NVEELIEA 205
SVG AD++K K I+++NGK +V+EL+++
Sbjct: 297 SVGKWADAKKQLKKIAKMNGKSNVDVDELVDS 328
>Z83228-1|CAC70093.1| 568|Caenorhabditis elegans Hypothetical
protein F52F12.1b protein.
Length = 568
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Frame = +2
Query: 119 SVGIEADSEKLEKVISELNGK---NVEELIEA 205
SVG AD++K K I+++NGK +V+EL+++
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELVDS 311
>Z81104-5|CAE17892.1| 285|Caenorhabditis elegans Hypothetical
protein M199.7 protein.
Length = 285
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +2
Query: 134 ADSEKLEKVISELNGKNVEELIEA 205
A E+LE+V+S+L VEE +EA
Sbjct: 192 ASKEELERVVSKLQTCRVEENVEA 215
>AF110415-1|AAF21932.1| 568|Caenorhabditis elegans organic cation
transporter 1 protein.
Length = 568
Score = 26.2 bits (55), Expect = 3.8
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 3/32 (9%)
Frame = +2
Query: 119 SVGIEADSEKLEKVISELNGK---NVEELIEA 205
SVG AD++K K I+++NGK +V+EL+++
Sbjct: 280 SVGKWADAKKQLKKIAKMNGKSNVDVDELVDS 311
>AF016688-3|AAB66076.2| 674|Caenorhabditis elegans Hypothetical
protein F18A12.4 protein.
Length = 674
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +2
Query: 101 VEKILSSVGIEADSEKLEKVISELNGKNVEELIEAGRGKLS 223
+ +IL + G++ DSE++ K E + ++ GKLS
Sbjct: 217 ISEILEANGVQPDSEEISKEFEEYSSLQMKLAKYQSSGKLS 257
>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 77 KASPAAADVEKILSSVGIEADS----EKLEKVISELNGKNVEE 193
KA A ++EKI V DS EKL K + E + K VEE
Sbjct: 850 KAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEE 892
>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
protein F11C3.3 protein.
Length = 1963
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 77 KASPAAADVEKILSSVGIEADS----EKLEKVISELNGKNVEE 193
KA A ++EKI V DS EKL K + E + K VEE
Sbjct: 850 KAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEE 892
>J01050-1|AAA28124.1| 1966|Caenorhabditis elegans myosin heavy chain
protein.
Length = 1966
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = +2
Query: 77 KASPAAADVEKILSSVGIEADS----EKLEKVISELNGKNVEE 193
KA A ++EKI V DS EKL K + E + K VEE
Sbjct: 853 KAGKEAEELEKINDKVKALEDSLAKEEKLRKELEESSAKLVEE 895
>Z81038-5|CAB02766.3| 970|Caenorhabditis elegans Hypothetical
protein C25A1.7 protein.
Length = 970
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 89 LGTLCRPTRRVIRGHVTHFLS 27
L LC+P++R+I +TH S
Sbjct: 8 LQPLCKPSKRIISNSLTHLSS 28
>U41545-6|AAK39135.1| 1130|Caenorhabditis elegans Temporarily
assigned gene nameprotein 278 protein.
Length = 1130
Score = 25.0 bits (52), Expect = 8.7
Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Frame = +2
Query: 128 IEADSEKLEKVISELNG-----KNVEELIEAGRGKLSS 226
+EA EKLE VIS+L KN E +E R L S
Sbjct: 403 VEAAKEKLESVISDLQVEVKALKNKVEFLEKERENLQS 440
>AC006661-10|AAF39887.1| 843|Caenorhabditis elegans Hypothetical
protein H20J04.1 protein.
Length = 843
Score = 25.0 bits (52), Expect = 8.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Frame = -3
Query: 120 ELRIFSTSAAAGDAL---PPNTASNTRPRNAFFKSL 22
E +F A G+AL NT+S PRN F K L
Sbjct: 637 ESEVFDKLAETGNALCLKVVNTSSEDVPRNEFLKKL 672
>AB096631-1|BAC76731.1| 972|Caenorhabditis elegans isoleucyl-tRNA
synthetase (mitochondrial)protein.
Length = 972
Score = 25.0 bits (52), Expect = 8.7
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 89 LGTLCRPTRRVIRGHVTHFLS 27
L LC+P++R+I +TH S
Sbjct: 8 LQPLCKPSKRIISNSLTHLSS 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,553,801
Number of Sequences: 27780
Number of extensions: 64143
Number of successful extensions: 271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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