Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_K02
         (107 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0574 - 22429346-22429538,22430212-22430291                       27   1.6  
03_06_0446 - 33985668-33985940,33986008-33986085,33986151-339862...    27   2.2  
01_01_0461 - 3414127-3414867                                           27   2.8  
08_02_0432 - 17103230-17103322,17103403-17103542,17104950-171052...    25   6.6  
08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819           25   6.6  
02_03_0369 - 18239123-18239499,18242046-18242445                       25   6.6  
08_02_1429 + 27040293-27040523,27041618-27041739,27042290-270423...    25   8.7  

>06_03_0574 - 22429346-22429538,22430212-22430291
          Length = 90

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 11 GTGTSGGDQPTFQEEGG 61
          G GT+GGD+PT +  GG
Sbjct: 19 GRGTTGGDRPTREANGG 35


>03_06_0446 -
           33985668-33985940,33986008-33986085,33986151-33986233,
           33986709-33986766,33987677-33987933,33988140-33988413
          Length = 340

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 2   HEGGTGTSGGDQPTFQEEGGDDD 70
           H GG G S GD    + + GDDD
Sbjct: 43  HPGGGGDSDGDNAVEEVDEGDDD 65


>01_01_0461 - 3414127-3414867
          Length = 246

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 8   GGTGTSGGDQPTFQEEGGDDDL 73
           GG G + GD     ++GGDDD+
Sbjct: 172 GGGGRAFGDDDDDDDDGGDDDM 193


>08_02_0432 -
           17103230-17103322,17103403-17103542,17104950-17105211,
           17105391-17105495,17105496-17105558,17106876-17107022
          Length = 269

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 8   GGTGTSGGDQPTFQEEGGDDD 70
           GG G  GGD    ++ G DDD
Sbjct: 172 GGGGNGGGDGGRARQRGDDDD 192


>08_01_0899 - 8862275-8862972,8863252-8863332,8863594-8863819
          Length = 334

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +2

Query: 8  GGTGTSGGDQPTFQEE 55
          GGTG SG D+P  +EE
Sbjct: 45 GGTGHSGNDRPETREE 60


>02_03_0369 - 18239123-18239499,18242046-18242445
          Length = 258

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 107 AARAAPSKFSCRGHRLLLPLGRW 39
           AA A   ++  RG R L+PLG+W
Sbjct: 48  AAGADRVRWDYRGQRQLVPLGQW 70


>08_02_1429 +
           27040293-27040523,27041618-27041739,27042290-27042392,
           27042530-27042620,27042851-27043023,27043379-27043467,
           27044212-27044319,27044408-27044498,27044708-27044797,
           27045587-27045658,27045756-27045849,27045940-27046087,
           27046961-27047222
          Length = 557

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   EGGTGTSGGDQPTFQEEGGDDDL 73
           +G  G  GGD    +EE GD++L
Sbjct: 33  DGSGGGGGGDSDGEEEEEGDEEL 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,428,708
Number of Sequences: 37544
Number of extensions: 29437
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 189
length of database: 14,793,348
effective HSP length: 16
effective length of database: 14,192,644
effective search space used: 269660236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)