Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K01
(472 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual 96 3e-21
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 58 5e-10
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 47 2e-06
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 32 0.038
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 29 0.47
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 1.4
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 27 1.4
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 3.3
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 4.4
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 7.7
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.7
>SPBC4F6.12 |||LIM domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 95.9 bits (228), Expect = 3e-21
Identities = 45/149 (30%), Positives = 72/149 (48%), Gaps = 1/149 (0%)
Frame = +1
Query: 28 GRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSPRCHGCGDPITD 207
GRI++A KK HP+ F C+TC + ++ F+ +C + + SPRC C PI D
Sbjct: 268 GRIISASGKKLHPQCFKCDTCSQNLEHVGFYYREGKFYCHLDYHEQFSPRCKHCKTPIED 327
Query: 208 RVIQALGVAWHAN-HFVXXXXXXXXXXXXFMEQAGRPYCSACYADKFAARCKGCLKPIVD 384
+ + +H N HF + + +C CY +K+A +CK C KPI+
Sbjct: 328 QAVHINNDWFHENHHFCAGCSEVFNVNIPCIYRDDLYWCQTCYDNKYAVKCKKCRKPILG 387
Query: 385 KAVIALDAKWHRDCFTCMKCRNPVTDSTF 471
+V D ++H C+TC C + D +
Sbjct: 388 ISVKGSDGEYHSQCWTCGACNALLGDEGY 416
Score = 26.6 bits (56), Expect = 1.9
Identities = 13/50 (26%), Positives = 20/50 (40%)
Frame = +1
Query: 10 CNTVIQGRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFA 159
C I G V + ++H + +TC C + + N C PC A
Sbjct: 381 CRKPILGISVKGSDGEYHSQCWTCGACNALLGDEGYFMIENTPICRPCKA 430
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 58.4 bits (135), Expect = 5e-10
Identities = 43/157 (27%), Positives = 60/157 (38%), Gaps = 10/157 (6%)
Frame = +1
Query: 10 CNTVIQGRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVH-----CVPCFAQHHSP 174
C VI G+ V AL +H E F C+ C + F + ++ C + +
Sbjct: 119 CGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRRLDL 178
Query: 175 RCHGCGDPITDRVIQALGVAWHANHFVXXXXXXXXX-XXXFMEQAGRPYCSACYADKFAA 351
C CG + I AL +H HF + E G+ YC Y+ FAA
Sbjct: 179 LCASCGMALRGYYITALNKKFHIEHFTCSLCYTVFGPNDSYYEYEGKVYCHYHYSTLFAA 238
Query: 352 RCKGCLKPIVDKAV----IALDAKWHRDCFTCMKCRN 450
RC GC PI+ + V + WH C K N
Sbjct: 239 RCCGCDGPILRQFVEVYRNGVSQNWHVPCHMIYKFWN 275
Score = 34.7 bits (76), Expect = 0.007
Identities = 23/94 (24%), Positives = 34/94 (36%), Gaps = 5/94 (5%)
Frame = +1
Query: 178 CHGCGDPITDRVIQALGVAWHANHFVXXXXXXXXXXXXF-----MEQAGRPYCSACYADK 342
C CG I+ + ++ALG +H F F P C Y +
Sbjct: 116 CASCGQVISGQYVRALGNIYHLECFRCHDCNSLVASKFFPIDDPTLNKQVPLCETDYFRR 175
Query: 343 FAARCKGCLKPIVDKAVIALDAKWHRDCFTCMKC 444
C C + + AL+ K+H + FTC C
Sbjct: 176 LDLLCASCGMALRGYYITALNKKFHIEHFTCSLC 209
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 46.8 bits (106), Expect = 2e-06
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +1
Query: 307 GRPYCSACYADKFAARCKGCLKPIVDKAVIALDAKWHRDCFTCMKCRNPVTDSTF 471
GRP CS+C A C C I D A+++ +HR+CF C CR + DS F
Sbjct: 67 GRPVCSSC-----AHTCTACRMRIKDYALMSGYDSYHRECFRCHDCRKQIIDSNF 116
Score = 33.5 bits (73), Expect = 0.017
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 58 WHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSPR 177
+H E F C+ CRK I + F + N + C C H R
Sbjct: 97 YHRECFRCHDCRKQIIDSNFKRDNRTIFCNDCKQVRHPSR 136
Score = 29.5 bits (63), Expect = 0.27
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +1
Query: 412 WHRDCFTCMKC 444
WH+DCF C KC
Sbjct: 40 WHKDCFCCTKC 50
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 32.3 bits (70), Expect = 0.038
Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 3/96 (3%)
Frame = +1
Query: 52 KKWHPEHFTCNTCRKPIDGAK--FHQHN-NGVHCVPCFAQHHSPRCHGCGDPITDRVIQA 222
K WH + F C C K +D + F Q + + C C C+GC PI + A
Sbjct: 42 KCWHSDCFKCVNCNKKLDPSSEDFSQDDQKQIFCKLCV-----DICNGCSTPICE--FNA 94
Query: 223 LGVAWHANHFVXXXXXXXXXXXXFMEQAGRPYCSAC 330
+ + ANH F + G+ YC C
Sbjct: 95 VSNS-QANHPCCSNCRAFINSNAFGKFKGQHYCLPC 129
Score = 29.5 bits (63), Expect = 0.27
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Frame = +1
Query: 355 CKGCLKPIVDKAVIALDAK-WHRDCFTCMKCRNPVTDST 468
C C + + + + K WH DCF C+ C + S+
Sbjct: 24 CIKCWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSS 62
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 28.7 bits (61), Expect = 0.47
Identities = 12/54 (22%), Positives = 26/54 (48%)
Frame = +1
Query: 13 NTVIQGRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSP 174
+T+ G + + +K +HP+ ++ +TCRK I + + +H+ P
Sbjct: 2536 DTIPLGEYLDSAHKVYHPKEWSLSTCRKLIAEKQMEDLETRLKVYDLVCRHYRP 2589
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 293 LWNRLDVRIARLATLTNSQPVARDA 367
LWN L VRI + TLT +Q + D+
Sbjct: 275 LWNGLGVRIVMIGTLTGAQWLIYDS 299
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 1.4
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +1
Query: 121 QHNNGVHCVPCFAQHHSPRCHGCGDPITDRVIQALGVAWHANHFV 255
Q+ + + PC + H+ P C C D + ++ I W A+ V
Sbjct: 382 QYGSKIEDTPC-SLHNVPGCFSCFDRLGEKNITETNSNWFAHRLV 425
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 3.3
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Frame = -2
Query: 399 SDYSFVDDGFQASLATGCEFVSVASRAIRTSSLFHKSTASELLLATTAYEVVSV--PRHA 226
S S VD AS ATG S+A+ ++ SS +TAS +T++ SV +
Sbjct: 957 SSSSEVDPSTAAS-ATGSSTSSIATASVSGSSTSSVATASATDSSTSSIAAASVTGSSTS 1015
Query: 225 QCLDHAVSDGITAAVA 178
+V+D T++VA
Sbjct: 1016 SVATASVTDSSTSSVA 1031
Score = 24.6 bits (51), Expect = 7.7
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = -2
Query: 366 ASLATGCEFVSVASRAIRTSSLFHKSTASELLLATTAYEVVSV--PRHAQCLDHAVSDGI 193
A+ TG SVA+ ++ SS +TAS +T++ V SV + + +D
Sbjct: 1006 AASVTGSSTSSVATASVTDSSTSSVATASATDSSTSSIAVASVTGSSTSSVATASATDSS 1065
Query: 192 TAAVAPRAV 166
T++VA ++
Sbjct: 1066 TSSVATASI 1074
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 4.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +2
Query: 230 WRGTLTTSYAVVARRSSEAVDLWNRLDVRIARLATLTNSQPVARD 364
+ TLTT+ ++ A + + +R DVR+ + LT+ Q + D
Sbjct: 399 YNSTLTTTRSIPANKPTFFWASCDRKDVRVGDIIRLTSDQTLPAD 443
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 24.6 bits (51), Expect = 7.7
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 52 KKWHPEHFTCNTCRKPI 102
+KW H TC CRK +
Sbjct: 137 QKWLENHCTCPLCRKEV 153
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 7.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 291 STASELLLATTAYEVVSVPRHAQCLDHAVSDGI 193
+T + ATT V S A HAV+DGI
Sbjct: 254 NTTHDQAAATTTAAVASASTTATAESHAVADGI 286
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,695
Number of Sequences: 5004
Number of extensions: 38975
Number of successful extensions: 137
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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