Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_K01
(472 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 51 5e-07
06_01_0579 + 4099039-4099086,4099798-4099848,4100151-4100286,410... 50 7e-07
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 40 0.001
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 35 0.029
03_02_0476 + 8768182-8768313,8768734-8768833,8768949-8768986,876... 30 0.82
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 30 1.1
12_02_0498 + 19721038-19721178,19721376-19721472,19721576-197216... 29 2.5
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713... 29 2.5
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 29 2.5
01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518 29 2.5
05_06_0273 - 26851077-26851167,26851433-26851869,26852125-268522... 28 3.3
03_02_0459 + 8649448-8651994 28 3.3
08_02_0685 + 20039318-20040433,20040574-20040982,20042906-200429... 28 4.4
06_01_0326 + 2372176-2373057,2373146-2373610 27 5.8
02_05_0497 - 29502012-29502101,29502128-29502197,29502302-295024... 27 5.8
02_05_0094 - 25758213-25758479,25758886-25758975,25759090-257591... 27 5.8
12_01_0582 - 4752576-4752786,4752955-4753037,4753324-4753530,475... 27 7.6
02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467 27 7.6
01_06_0586 + 30420745-30421350,30421933-30422172,30422770-304229... 27 7.6
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 50.8 bits (116), Expect = 5e-07
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +1
Query: 7 GC-NTVIQGRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSPRCH 183
GC N + GR ++ ++ WHP+ F C C KPI +F H + + C+ P+C
Sbjct: 259 GCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSCYKDFFHPKCD 318
Query: 184 GC 189
C
Sbjct: 319 VC 320
Score = 40.3 bits (90), Expect = 8e-04
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 331 YADKFAARCKGCLKPIVDKAVIA-LDAKWHRDCFTCMKCRNPVTDSTF 471
+A + C GC PI ++ +D+ WH CF C C P+++ F
Sbjct: 249 FASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEF 296
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Frame = +1
Query: 154 FAQHHSPRCHGCGDPITD-RVIQALGVAWHANHFVXXXXXXXXXXXXFMEQAGRPYCSAC 330
FA S C GC +PI R + + WH F F +PY +C
Sbjct: 249 FASSGSRTCAGCKNPIGHGRFLSCMDSVWHPQCFRCFACNKPISEYEFAMHEDQPYHKSC 308
Query: 331 YADKFAARCKGC 366
Y D F +C C
Sbjct: 309 YKDFFHPKCDVC 320
>06_01_0579 +
4099039-4099086,4099798-4099848,4100151-4100286,
4100287-4100401,4100496-4100528,4101037-4101166,
4101663-4101751,4102042-4102148,4102238-4102309,
4102384-4102764,4104907-4105064,4105581-4105674,
4106082-4106089,4106297-4106387,4107136-4107289,
4108257-4108377,4108468-4108551,4108946-4109065,
4109181-4109393,4109482-4109544,4109668-4109783,
4110132-4110190,4111126-4111445
Length = 920
Score = 50.4 bits (115), Expect = 7e-07
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 7 GCNTVI-QGRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQHHSPRCH 183
GC++ I GR ++ + WHPE F C+ C +PI +F N + C+ + P+C
Sbjct: 560 GCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPKCD 619
Query: 184 GC 189
C
Sbjct: 620 VC 621
Score = 35.9 bits (79), Expect = 0.016
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Frame = +1
Query: 178 CHGCGDPITD-RVIQALGVAWHANHFVXXXXXXXXXXXXFMEQAGRPYCSACYADKFAAR 354
C GC I R + +G WH F F PY CY ++F +
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEFSMSGNHPYHKTCYKERFHPK 617
Query: 355 CKGC 366
C C
Sbjct: 618 CDVC 621
Score = 34.3 bits (75), Expect = 0.050
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 355 CKGCLKPIVDKAVIA-LDAKWHRDCFTCMKCRNPVTDSTF 471
C GC I ++ + A WH +CF C C P+ D F
Sbjct: 558 CAGCHSEIGHGRFLSCMGAVWHPECFRCHACNQPIYDYEF 597
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 39.5 bits (88), Expect = 0.001
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 7 GCNTVI-QGRIVTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNG 135
GC T I QGR ++ ++ WHP+ F C C +PI + + +G
Sbjct: 180 GCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISEYEIPTNKDG 223
Score = 37.1 bits (82), Expect = 0.007
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 355 CKGCLKPIVDKAVIA-LDAKWHRDCFTCMKCRNPVTD 462
C GC PI ++ +D+ WH CF C C P+++
Sbjct: 178 CAGCKTPIGQGRFLSCMDSVWHPQCFRCFACDRPISE 214
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 35.1 bits (77), Expect = 0.029
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = +1
Query: 7 GCNTVI-QGRIVTALNKKWHPEHFTCNTCRKPI 102
GC I G ++ L WHP+ F C++CR PI
Sbjct: 116 GCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPI 148
Score = 32.3 bits (70), Expect = 0.20
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +1
Query: 355 CKGCLKPIVDKAVIA-LDAKWHRDCFTCMKCRNPVTD 462
C GC I ++ L WH CF C CR+P+ +
Sbjct: 114 CGGCKHEIGHGHYLSCLGMYWHPQCFRCSSCRHPIRE 150
Score = 29.1 bits (62), Expect = 1.9
Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 3/88 (3%)
Frame = +1
Query: 118 HQHNNGVHCVPCFAQHHSP---RCHGCGDPITDRVIQALGVAWHANHFVXXXXXXXXXXX 288
H+ +G H + C + P RC C PI + + L +
Sbjct: 119 HEIGHG-HYLSCLGMYWHPQCFRCSSCRHPIREMEVTFLQFSLECLKVFSGSDSLLYSVS 177
Query: 289 XFMEQAGRPYCSACYADKFAARCKGCLK 372
F PY CY + +C CL+
Sbjct: 178 QFTLLGTDPYHKLCYKELHHPKCDVCLQ 205
>03_02_0476 +
8768182-8768313,8768734-8768833,8768949-8768986,
8769102-8769191,8769465-8769695
Length = 196
Score = 30.3 bits (65), Expect = 0.82
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 352 RCKGCLKPIVDKAVIALDAK-WHRDCFTCMKCRNPVT 459
+CK C K + ++ D +HR CF C C++ ++
Sbjct: 8 KCKVCTKTVYPMDQLSTDGVVFHRSCFKCQHCKSTLS 44
>01_03_0303 +
14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 29.9 bits (64), Expect = 1.1
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = +2
Query: 182 TAAVIPSLTA*SKHWAWRGTLTTSYAVVARRSSEAVDLWNRLDVRIARLATLTNSQPV 355
T +IP + + WA + A V RR E V LWN L + + +L+N+ P+
Sbjct: 92 TVNLIPEVVGPHEEWALKSQTAALVAEVVRR--EGVALWNTL---LPSIVSLSNNGPI 144
>12_02_0498 +
19721038-19721178,19721376-19721472,19721576-19721619,
19722120-19722203,19722441-19722662
Length = 195
Score = 28.7 bits (61), Expect = 2.5
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +1
Query: 37 VTALNKKWHPEHFTCNTCRKPIDGAKFHQHNNGVHCVPCFAQ 162
+TA N+ +H F C+ C+ + A ++ ++C P F Q
Sbjct: 25 LTADNRVYHKACFRCHHCKGTLKLANYNSFEGVLYCRPHFDQ 66
>06_01_0926 -
7139220-7139318,7139394-7139478,7139573-7139643,
7139996-7140076,7140805-7140895,7141242-7141330,
7141749-7141802,7141906-7142085,7142175-7142237,
7142575-7142705,7142807-7142900,7143343-7143684,
7143957-7144348,7145010-7148487,7149101-7149187,
7149324-7149367,7149495-7149591,7150429-7150572
Length = 1873
Score = 28.7 bits (61), Expect = 2.5
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 352 RCKGCLKPIVDKAVIALDAK-WHRDCFTCMKCRNPVTDSTF 471
+C C + + +A D + +HR CF C C+ + S +
Sbjct: 12 KCDSCGRTVYPVEELAADGRVYHRPCFRCTHCKATLQFSNY 52
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 28.7 bits (61), Expect = 2.5
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Frame = -2
Query: 339 VSVASRAIRTSSLFHKSTASELLLATTAYEVVSVPRHAQCLDHAVSDG---ITAAVAPRA 169
V A + S + K++A L L E++S Q L + +G + VAP+A
Sbjct: 356 VLCAKNSAPLSGVVSKASAGSLELI----ELLSCRNMMQFLSSSAENGWRVLGGTVAPKA 411
Query: 168 VMLSEAGYAVNTVVVLVELGT-IYGLAARVACEVFRVP 58
+ LSE T++VL GT + L R + R+P
Sbjct: 412 IPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIP 449
>01_06_0609 + 30583191-30583229,30583799-30583907,30584377-30585518
Length = 429
Score = 28.7 bits (61), Expect = 2.5
Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 57 VAPGTLHMQHVPQAHRWCQVPPAQ-QRCSLRTLLRSASQPAVPRLR*SH 200
V PG++ + Q R C+ PPAQ +R + T L S A L SH
Sbjct: 263 VKPGSVEAAEMAQTLRDCEAPPAQGERKACATSLESMVDFATSSLGTSH 311
>05_06_0273 -
26851077-26851167,26851433-26851869,26852125-26852271,
26852352-26854415,26854792-26854908,26855007-26855093,
26855350-26855439,26855523-26855609,26856736-26856810
Length = 1064
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 260 VVARRSSEAVDLWNRLDVRIARLATLTNSQPV 355
V+ RRS + D R ++R +RLAT + ++PV
Sbjct: 700 VITRRSIDIKDKLERPEIRPSRLATTSPAEPV 731
>03_02_0459 + 8649448-8651994
Length = 848
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +1
Query: 61 HPEHFTCNTCRKPIDGAKFHQHNNGVH-CVPCFAQHHSP 174
H H TC+ CR PI G++F + + C C+++ P
Sbjct: 773 HGRH-TCSICRYPIIGSRFKETKHSFSLCNRCYSEGKVP 810
>08_02_0685 +
20039318-20040433,20040574-20040982,20042906-20042973,
20043336-20043518,20043641-20043964,20045653-20045694
Length = 713
Score = 27.9 bits (59), Expect = 4.4
Identities = 22/99 (22%), Positives = 43/99 (43%)
Frame = -2
Query: 435 ASEAIAMPFRV*SDYSFVDDGFQASLATGCEFVSVASRAIRTSSLFHKSTASELLLATTA 256
A+EA+A+ V F+A++ E ++VA+ + ++L +T + A
Sbjct: 35 AAEAVAVGKAVAEAMEVAKAAFEAAMKKVAEALAVANEVMAKAALEAAATEAAAKEVAEA 94
Query: 255 YEVVSVPRHAQCLDHAVSDGITAAVAPRAVMLSEAGYAV 139
V+ A ++ A + + A A A ++ A AV
Sbjct: 95 VAVLKAVLEAAAMEEAEAAAVAKAAAEAAEAVAVAKVAV 133
>06_01_0326 + 2372176-2373057,2373146-2373610
Length = 448
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = +2
Query: 170 ARGATAAVIPSLTA*SKHWAWRGTLTTSYAVVARRSSEAVDLWNRLDVRIARLATLT 340
A ATA ++ ++TA ++WA R + S+ A S+ V + NR + + T T
Sbjct: 24 AATATATLVGNITADEEYWAKRSEVARSFNRAA-YVSDPVAVLNRFNEDVLNTTTAT 79
>02_05_0497 -
29502012-29502101,29502128-29502197,29502302-29502411,
29502530-29502641,29503341-29503498,29503592-29503807,
29504127-29504354,29504722-29504801,29504886-29505056,
29505179-29505281,29505369-29505551,29506313-29506813,
29506935-29507100,29507517-29507566,29508047-29508127,
29508291-29508398,29508874-29508939,29509053-29509109,
29509442-29509507,29509917-29510006,29510850-29510975,
29511681-29511717,29512192-29512250,29512562-29512615,
29513294-29513428,29513542-29513612,29513720-29513957
Length = 1141
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 231 HAQCLDHAVSDGITAAVAPRAVMLSEAGYAVNTVVVLVELGTIYGLA 91
H+ CL D T AV+ +MLS A Y + +V L ++ A
Sbjct: 661 HSDCLGLVAVDRNTVAVSISDIMLSFAAYPIEIPAEVVFLHPVHNFA 707
>02_05_0094 -
25758213-25758479,25758886-25758975,25759090-25759118,
25759208-25759307,25759411-25759545
Length = 206
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 352 RCKGCLKPIVDKAVIALDA-KWHRDCFTCMKCRNPVT 459
+CK C K + ++ D +H+ CF C C+ ++
Sbjct: 9 KCKACDKTVHFIDLLTADGVSYHKTCFKCSHCKGTLS 45
>12_01_0582 -
4752576-4752786,4752955-4753037,4753324-4753530,
4755128-4755207,4756853-4756998,4757088-4757719
Length = 452
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 131 LLCWWNLAPSMGLRHVLHVKCSGCHFLFNAVTILP 27
L+ +W + + L+HVL V SG L AV +LP
Sbjct: 318 LVLYWIVYWDIQLQHVLAVLLSGSGVLIPAVCVLP 352
>02_01_0602 + 4481869-4482111,4482315-4482472,4482603-4483467
Length = 421
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +3
Query: 75 HMQHVPQAHRWCQVPPAQQRCSLRTLLRSAS 167
H VP+AHR Q+PP + LL +A+
Sbjct: 195 HRARVPRAHRVLQLPPPLAAAAYAALLPAAA 225
>01_06_0586 +
30420745-30421350,30421933-30422172,30422770-30422919,
30423429-30423553,30423957-30423990,30424163-30424288
Length = 426
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -3
Query: 164 C*AKQGTQ*TPLLCWWNLAPSMGLRHVLHVKCSG 63
C KQGT+ TP+ W + + S G+ L K SG
Sbjct: 331 CKNKQGTRFTPMFQWPDKSLSFGVTQALAWKRSG 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,648,595
Number of Sequences: 37544
Number of extensions: 332995
Number of successful extensions: 1095
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1095
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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