Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J24
         (403 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    72   3e-14
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    72   3e-14
SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces ...    27   1.4  
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb...    25   4.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   4.4  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    25   5.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    24   7.7  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 72.1 bits (169), Expect = 3e-14
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = +2

Query: 47  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDIL 193
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNV GPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 72.1 bits (169), Expect = 3e-14
 Identities = 34/49 (69%), Positives = 41/49 (83%)
 Frame = +2

Query: 47  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDIL 193
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNV GPVR+ DIL
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVREDDIL 55


>SPCC1795.10c |||Sed5 Vesicle Protein Svp26 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 227

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 369 FFTRIIYILRAEYRDIVIFDGFILMLTHKFG*LVHY 262
           F  R++Y + A    +VIFDGF   L+  F    HY
Sbjct: 44  FLCRLVYFIMAVMVFLVIFDGFPFWLS-AFSIFSHY 78


>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = -1

Query: 238 PLSKSPGFTLRLEKGQ--DVSVADRSVHVPDDLTASLSDELHFDLSTLSL*SGAAEHFHD 65
           P+S  PG   + ++    +  + D S+   ++LTAS  +E H++L T        +   +
Sbjct: 391 PVSSQPGSDAKSQEFDFFEAKIPD-SIAKLNELTAS--NENHYELKTYDRAERLRQKIQE 447

Query: 64  TSKNVRLI 41
            S N RLI
Sbjct: 448 VSSNKRLI 455


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 4.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 244 IGPLSKSPGFTLRLEKGQDVSVADRSV 164
           + P+S  P  ++ L+   DVS AD SV
Sbjct: 168 LSPVSTFPASSISLDASSDVSAADVSV 194


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 24.6 bits (51), Expect = 5.8
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 232 IKVLYPR--LRLIMYQLSKFMC*H*YETVKDDYISVFSS*YINYPCKKNKRKLEGGPGT 402
           + +LY R  L++ + QLS     H  E V  DYI +       Y CK+ KR   G   T
Sbjct: 83  LNILYDRDHLKIALSQLSTAK--HLVENVARDYIRLLKYGDSLYRCKQLKRAALGRMAT 139


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 24.2 bits (50), Expect = 7.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 217 FTLRLEKGQDVSVADRSVHVPDDLTASLSDELHFDLSTLSL*SGAAEH 74
           FT+ L   + ++V D S+  PD +   + D   FD S +S  S   EH
Sbjct: 33  FTISLLLERAIAVHDPSIISPDQIAEKIED-CGFDASVIS--STEGEH 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,609,411
Number of Sequences: 5004
Number of extensions: 28325
Number of successful extensions: 78
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 136158338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)