Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J24
(403 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28 pro... 85 6e-17
L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28 pro... 85 6e-17
CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein. 85 6e-17
BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28 p... 85 6e-17
BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28 p... 85 6e-17
BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28 p... 85 6e-17
BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28 p... 85 6e-17
AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28 p... 85 6e-17
AL023513-1|CAI19979.1| 57|Homo sapiens protein ( Human DNA seq... 43 4e-04
U43416-1|AAA86260.1| 861|Homo sapiens replication control prote... 30 2.5
U40152-1|AAC50325.1| 861|Homo sapiens HsORC1 protein. 30 2.5
BC011539-1|AAH11539.1| 861|Homo sapiens origin recognition comp... 30 2.5
AL513218-8|CAI12288.1| 861|Homo sapiens origin recognition comp... 30 2.5
>U58682-1|AAB07066.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>L05091-1|AAC15855.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>CR457055-1|CAG33336.1| 69|Homo sapiens RPS28 protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC070218-1|AAH70218.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC070217-1|AAH70217.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC021239-1|AAH21239.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>BC000354-1|AAH00354.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>AB061846-1|BAB79484.1| 69|Homo sapiens ribosomal protein S28
protein.
Length = 69
Score = 85.4 bits (202), Expect = 6e-17
Identities = 39/51 (76%), Positives = 45/51 (88%)
Frame = +2
Query: 44 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVNGPVRDGDILT 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNV GPVR+GD+LT
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVREGDVLT 57
>AL023513-1|CAI19979.1| 57|Homo sapiens protein ( Human DNA
sequence from clone RP1-268D13 on chromosome
22q11.21-12.2. ).
Length = 57
Score = 42.7 bits (96), Expect = 4e-04
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +2
Query: 47 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 157
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>U43416-1|AAA86260.1| 861|Homo sapiens replication control protein
1 protein.
Length = 861
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 81 AAPDHRDSVLRSKWSSSERLAVRSSGT*TDLSATETS*PFSSRSVKPGDFDKGPIP*VKA 260
A+P+HR +LR++ ++S+ + +R T T +S + S S +KP + K KA
Sbjct: 310 ASPEHR-IILRTRIAASKTIDIREERTLTPISGGQRSSVVPSVILKPENIKKRDAKEAKA 368
Query: 261 HN 266
N
Sbjct: 369 QN 370
>U40152-1|AAC50325.1| 861|Homo sapiens HsORC1 protein.
Length = 861
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 81 AAPDHRDSVLRSKWSSSERLAVRSSGT*TDLSATETS*PFSSRSVKPGDFDKGPIP*VKA 260
A+P+HR +LR++ ++S+ + +R T T +S + S S +KP + K KA
Sbjct: 310 ASPEHR-IILRTRIAASKTIDIREERTLTPISGGQRSSVVPSVILKPENIKKRDAKEAKA 368
Query: 261 HN 266
N
Sbjct: 369 QN 370
>BC011539-1|AAH11539.1| 861|Homo sapiens origin recognition
complex, subunit 1-like (yeast) protein.
Length = 861
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 81 AAPDHRDSVLRSKWSSSERLAVRSSGT*TDLSATETS*PFSSRSVKPGDFDKGPIP*VKA 260
A+P+HR +LR++ ++S+ + +R T T +S + S S +KP + K KA
Sbjct: 310 ASPEHR-IILRTRIAASKTIDIREERTLTPISGGQRSSVVPSVILKPENIKKRDAKEAKA 368
Query: 261 HN 266
N
Sbjct: 369 QN 370
>AL513218-8|CAI12288.1| 861|Homo sapiens origin recognition
complex, subunit 1-like (yeast) protein.
Length = 861
Score = 30.3 bits (65), Expect = 2.5
Identities = 19/62 (30%), Positives = 33/62 (53%)
Frame = +3
Query: 81 AAPDHRDSVLRSKWSSSERLAVRSSGT*TDLSATETS*PFSSRSVKPGDFDKGPIP*VKA 260
A+P+HR +LR++ ++S+ + +R T T +S + S S +KP + K KA
Sbjct: 310 ASPEHR-IILRTRIAASKTIDIREERTLTPISGGQRSSVVPSVILKPENIKKRDAKEAKA 368
Query: 261 HN 266
N
Sbjct: 369 QN 370
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,033,716
Number of Sequences: 237096
Number of extensions: 1058523
Number of successful extensions: 1934
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1934
length of database: 76,859,062
effective HSP length: 82
effective length of database: 57,417,190
effective search space used: 2928276690
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -