Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J24
         (403 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    79   2e-15
AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical ...    26   8.8  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 78.6 bits (185), Expect = 2e-15
 Identities = 40/54 (74%), Positives = 45/54 (83%), Gaps = 1/54 (1%)
 Frame = +2

Query: 38  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVNGPVRDGDILT 196
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNV GPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>AL034543-2|CAA22515.1| 1696|Caenorhabditis elegans Hypothetical
            protein Y81G3A.3 protein.
          Length = 1696

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 217  FTLRLEKGQDVSVADRSVHVPDDLTASLSDELH 119
            FTL++   Q +    R + + DD+ A L D LH
Sbjct: 1195 FTLKIGHAQLIEAQIRHLKLSDDVRAELLDALH 1227


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,998,382
Number of Sequences: 27780
Number of extensions: 159764
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 630384202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)