Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J24
         (403 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   2.3  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    22   2.3  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    22   2.3  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    22   2.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   2.3  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    22   2.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    22   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   3.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +1

Query: 151  HQERERTCPRRRHPDPSRVGA 213
            ++E     P RR P P R+G+
Sbjct: 1689 YEELNHCAPNRRCPPPPRMGS 1709


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 QSGVHRRD*PSDHQERERTCPRRRH 189
           +S  H     S H  RER+C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 QSGVHRRD*PSDHQERERTCPRRRH 189
           +S  H     S H  RER+C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 QSGVHRRD*PSDHQERERTCPRRRH 189
           +S  H     S H  RER+C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 QSGVHRRD*PSDHQERERTCPRRRH 189
           +S  H     S H  RER+C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 QSGVHRRD*PSDHQERERTCPRRRH 189
           +S  H     S H  RER+C R R+
Sbjct: 207 RSRTHGFQHTSSHYSRERSCSRDRN 231


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = +1

Query: 115 QSGVHRRD*PSDHQERERTCPRRRH 189
           +S  H     S H  RER+C R R+
Sbjct: 218 RSRTHGFQHTSSHYSRERSCSRDRN 242


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.8 bits (44), Expect = 3.0
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 8/41 (19%)
 Frame = +1

Query: 100  TVYSGQSGVHRR--------D*PSDHQERERTCPRRRHPDP 198
            TV SG S  HRR           SD+   ERT  R++ P P
Sbjct: 1317 TVSSGSSEDHRRPLSEHIYSSIDSDYSTLERTAWRQQQPPP 1357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,620
Number of Sequences: 438
Number of extensions: 1984
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10008927
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)