Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J23
         (323 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces...    27   0.53 
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha...    25   2.1  
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    25   2.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   2.8  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    24   6.5  
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos...    24   6.5  
SPAC869.11 ||SPAC922.08c|amino acid permease, unknown 6|Schizosa...    23   8.6  
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst...    23   8.6  
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    23   8.6  

>SPAP7G5.06 |||amino acid permease, unknown 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 583

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 231 ICYAIIGIVAFVTPEWIGDLETEYPRKSGLW 323
           I Y +IGI+ F T   +G+L   YP   G +
Sbjct: 120 IDYTLIGIMMFFTVYALGELAVSYPVAGGFY 150


>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
           Upf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 70  NSVVCCVRCNKKYYNIR 120
           NS++ C+ CNK + N+R
Sbjct: 53  NSILKCLHCNKWFCNVR 69


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +3

Query: 231 ICYAIIGIVAFVTPEWIGDLETEYP 305
           ICY+++G +  +T   +G+L   +P
Sbjct: 119 ICYSLVGSMVLMTVYSLGELAVAFP 143


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -2

Query: 136 PILFISGCYNTFCYXGHNKQHY---YQH 62
           P L++  C++TFC+   +   Y   YQH
Sbjct: 454 PWLYVGMCFSTFCWHVEDNYTYSVNYQH 481


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -2

Query: 145 IFEPILFISGCYNTFCY 95
           IFEPIL +   Y  F Y
Sbjct: 303 IFEPILLVVSTYTAFVY 319


>SPCC1450.11c |cek1||serine/threonine protein kinase
           Cek1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1338

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = +3

Query: 132 MGSKIEYVDSSHLYATNYVRNP--KAIGVLWAIFTICYAIIGIVAFVTPEWIGDLETEYP 305
           +G  I +  S+    T +V NP   ++G +  + T    +IG  A +  +++ DL T Y 
Sbjct: 139 IGILIRHPGSAIPAHTMWVVNPATNSLGSVSPLVTKLLDVIGFGASLLDKYLCDLRTSYH 198

Query: 306 RKSGL 320
           + + L
Sbjct: 199 KHNSL 203


>SPAC869.11 ||SPAC922.08c|amino acid permease, unknown
           6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 580

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 231 ICYAIIGIVAFVTPEWIGDLETEYPRKSG 317
           I Y++IGI+ F     +G++   YP   G
Sbjct: 113 INYSLIGIMMFFIVYALGEMAVAYPVAGG 141


>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
           Pst2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1075

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/42 (21%), Positives = 21/42 (50%)
 Frame = +2

Query: 128 QDGFENRIRGFFAFIRYKLCA*SQSHWRSLGYIHDLLRDYRH 253
           Q  FE+ +R ++    YK+    +  W +   +H ++ D ++
Sbjct: 826 QSAFEDYLRFYYGNKAYKIYTIDKLVWSAAKQVHHIVSDGKY 867


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 151  YSIFEPILFISGCYNTFCYXG 89
            YS   P LF+ G +N F Y G
Sbjct: 966  YSRQFPNLFVQGAFNRFGYDG 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,387,548
Number of Sequences: 5004
Number of extensions: 27288
Number of successful extensions: 68
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)