Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J23
         (323 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0630 - 20097672-20097772,20097983-20102012                       32   0.12 
08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828     27   2.6  
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884...    27   4.5  
04_03_0184 + 12395349-12395542,12396821-12397467,12398119-123986...    26   7.8  

>07_03_0630 - 20097672-20097772,20097983-20102012
          Length = 1376

 Score = 31.9 bits (69), Expect = 0.12
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 114 HPDINKMGSKIEYVDSSHLYATNYVRNPKAIGVL 215
           HP+ N+  +K+EY+   H  A  Y+RNP  I ++
Sbjct: 233 HPE-NEKSNKVEYIRHPHDSAVTYLRNPAVIPIV 265


>08_02_0681 + 20013975-20014298,20014391-20014594,20014790-20014828
          Length = 188

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 10/29 (34%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
 Frame = +3

Query: 210 VLWAIFTICYAIIG-IVAFVTPEWIGDLE 293
           VL+A+F++C+A++G ++  + PE  G ++
Sbjct: 130 VLFALFSVCFAVVGLLLQELAPEEKGSIQ 158


>01_06_0610 -
           30587269-30587717,30587996-30588212,30588363-30588482,
           30589092-30589202,30589300-30589374,30589940-30590031,
           30590121-30590302,30590479-30590570,30591179-30591283,
           30591374-30591451,30591553-30591705
          Length = 557

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 181 FVAYKCEESTYSIFEPILFISGCYN 107
           FVA +  +ST     PILF  GC N
Sbjct: 418 FVAERAAQSTSEATAPILFFFGCRN 442


>04_03_0184 +
           12395349-12395542,12396821-12397467,12398119-12398655,
           12399087-12399239,12399315-12399809,12400032-12400555
          Length = 849

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 229 VNIAQRTPMALGLRT*FVAYKCEESTYSIFEPILFISGC-YNTF 101
           +NI+   PM  G+      Y    S++SIF+  L I+GC ++T+
Sbjct: 92  INISATIPMVPGVAE--YNYSWNLSSFSIFDASLNITGCEFDTY 133


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,188,826
Number of Sequences: 37544
Number of extensions: 154188
Number of successful extensions: 342
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 333
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 340
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)