Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J21
(321 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8F11.07c |cdc24||DNA replication protein Cdc24|Schizosacchar... 28 0.40
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 26 1.6
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 25 2.1
SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine N-methy... 24 5.0
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 24 6.6
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 24 6.6
SPBC646.12c |gap1|src1, sar1|GTPase activating protein Gap1|Schi... 23 8.7
SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr 3|... 23 8.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 23 8.7
SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 23 8.7
>SPAC8F11.07c |cdc24||DNA replication protein
Cdc24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 501
Score = 27.9 bits (59), Expect = 0.40
Identities = 27/87 (31%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
Frame = -1
Query: 309 FTFHSNS*YYT*FDVNKVQE*GKNGFDH*LLSSHEFVRLLNPSYNTLK-SPKQ*V**HAH 133
F FH YYT K+++ +N + L SS F L + +N LK S + H
Sbjct: 89 FHFHCYDYYYTPIPSLKLKDSEENTCEMILHSS--FYLLFHEPFNILKGSTLRFSQSRIH 146
Query: 132 M-FQIRKQFVFSPYTSYIHLFSYIKIK 55
+ +RKQ F P TS++ + Y K
Sbjct: 147 QKWYLRKQIRFLPTTSFVPVLQYAASK 173
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 1.6
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = -1
Query: 210 HEFVRLLNPSYNTLKSPKQ*V**HAHMFQIRKQFVFSPYTSYI 82
HEF R S L SP + HA MF+ + V PY SYI
Sbjct: 82 HEFTR----SVQELASPGEMR--HAQMFEFEFKHVDKPYESYI 118
>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 100
Score = 25.4 bits (53), Expect = 2.1
Identities = 7/27 (25%), Positives = 17/27 (62%)
Frame = -1
Query: 105 FSPYTSYIHLFSYIKIKVKH*HTTRHH 25
++PYT + ++++ +K +T+ HH
Sbjct: 26 YTPYTYIVSFHNFVRFPIKQRNTSIHH 52
>SPBC8D2.10c |rmt3|rmt3|type I ribosomal protein arginine
N-methytransferase Rmt3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 543
Score = 24.2 bits (50), Expect = 5.0
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 25 MMSRCMSMFYFDFYITK*VNITCIWAEYKLFSYLK 129
+ S C FDFY K N +A KL +Y++
Sbjct: 73 LWSHCKEAHNFDFYQVKQQNNLDFYACIKLVNYIR 107
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 23.8 bits (49), Expect = 6.6
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 166 ITKTVGIITCTHVSNTKTICIQPIYKLY 83
ITK GI+ +SNT TI P ++
Sbjct: 1973 ITKACGILLLDSISNTGTIMPTPYLDIH 2000
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 23.8 bits (49), Expect = 6.6
Identities = 7/10 (70%), Positives = 10/10 (100%)
Frame = +1
Query: 133 VCMLLYLLFW 162
VC++L+LLFW
Sbjct: 91 VCLILFLLFW 100
>SPBC646.12c |gap1|src1, sar1|GTPase activating protein
Gap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 766
Score = 23.4 bits (48), Expect = 8.7
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = -1
Query: 210 HEFVRLLNPSYNTLK 166
HEF + LN +YN +K
Sbjct: 96 HEFAKRLNDNYNAVK 110
>SPCC736.11 |ago1|csp9|argonaute|Schizosaccharomyces pombe|chr
3|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 8.7
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 161 QNSRYNNMHTCFKYENNLYSAHIQVIFTYLVI 66
Q S N+HT ++ N+ YS+ QV+ + + +
Sbjct: 114 QKSSKINLHTLSQFVNSKYSSDPQVLSSIMFL 145
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 23.4 bits (48), Expect = 8.7
Identities = 8/21 (38%), Positives = 16/21 (76%)
Frame = -1
Query: 219 LSSHEFVRLLNPSYNTLKSPK 157
L+ ++ ++LL+P T+KSP+
Sbjct: 97 LNGYDSLKLLSPFLRTIKSPR 117
>SPAC2F3.18c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 110
Score = 23.4 bits (48), Expect = 8.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = -2
Query: 158 NSRYNNMHTCFKYENNLYSAHIQVIFTY 75
N + N CFKY NL A I Y
Sbjct: 80 NIFFRNSENCFKYSMNLSVAEGSSILIY 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,300,274
Number of Sequences: 5004
Number of extensions: 25444
Number of successful extensions: 61
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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