Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J21
         (321 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical pr...    27   4.0  
AF548468-1|AAN40699.1|  485|Caenorhabditis elegans poly ADP-ribo...    25   9.2  
AC006662-4|AAF39896.2|  485|Caenorhabditis elegans Poly(adp-ribo...    25   9.2  

>Z81061-5|CAB02935.4|  695|Caenorhabditis elegans Hypothetical
           protein F14H8.6 protein.
          Length = 695

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
 Frame = +1

Query: 1   ARGLF*IKMMSRCMSMFYFD----FYITK*VNITCIWAEYKLFSYLKHVCMLL 147
           A GLF  K++  C+ +F+++    FYI+K  N T    E+ +FSY K +  +L
Sbjct: 243 AFGLF--KLIFICVVIFHWNGCLYFYISKVYNYTTARLEHWIFSYDKIINPIL 293


>AF548468-1|AAN40699.1|  485|Caenorhabditis elegans poly ADP-ribose
           metabolism enzyme 4 protein.
          Length = 485

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 111 FVFSPYTSYIHLFSYIKIKVKH 46
           +VFS YT Y +   + KI  KH
Sbjct: 303 YVFSSYTGYSNTLKWAKITPKH 324


>AC006662-4|AAF39896.2|  485|Caenorhabditis elegans Poly(adp-ribose)
           metabolism enzymeprotein 4 protein.
          Length = 485

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 111 FVFSPYTSYIHLFSYIKIKVKH 46
           +VFS YT Y +   + KI  KH
Sbjct: 303 YVFSSYTGYSNTLKWAKITPKH 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,013,687
Number of Sequences: 27780
Number of extensions: 138801
Number of successful extensions: 267
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)