Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J17
         (379 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    37   0.001
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.3  
SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    26   2.3  
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|...    25   5.2  
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.2  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   5.2  
SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit S...    24   6.9  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    24   9.1  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    24   9.1  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 19/38 (50%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +1

Query: 214 GQLQGKVVNSPSGKA-FYSFQGIPYAKPPLGSLRFRAP 324
           G L G  V   +GK   + F GI YAKPP+G LR+R P
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRP 39


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 268 NCRTPCPMDCSPLYPEAGPAPLSLSVPRSFC 176
           +C  PCP+ C P     GP P   +    FC
Sbjct: 289 DCEHPCPLLCHP-----GPCPPCTATVEKFC 314


>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 25.8 bits (54), Expect = 2.3
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = -3

Query: 101 HKLIINVNSINRCLEMQFTR 42
           +K IINVNS+ R L+M+  R
Sbjct: 313 YKTIINVNSLFRILDMEIER 332


>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 310 SRILMVVSRTVSPGNCRT 257
           S IL+ ++ TV PG+C T
Sbjct: 206 SSILIFIAETVEPGSCST 223


>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +1

Query: 259 FYSFQGIPYAKPPLGSLRFRAPQPP 333
           FY+     YA PP G  R   P PP
Sbjct: 115 FYARPQSSYAPPPSGRPRISYPYPP 139


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +1

Query: 331 PEPWEGIRD 357
           PEPW GIRD
Sbjct: 273 PEPWRGIRD 281


>SPBC8D2.07c |sfc9||transcription factor TFIIIC complex subunit Sfc9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 673

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -2

Query: 276 PLETVERLARWTVHHFTLKLALLHCHYRCLGHSATSQVI*ELINCRYHDD-AFSNW 112
           PL ++   + W V  F L     H H   + HS+T       +NC +    +FS+W
Sbjct: 151 PLVSLPSSSPWGVCLFALGAESGHVHLSIMSHSSTPFFKSFDLNCSWVVQLSFSSW 206


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
 Frame = +1

Query: 265 SFQGIPYAKPPLGSLR--FRAPQPPEPWEGIRDATAEGN 375
           SFQ  P A  P  SL   +  P PP P   + D  A+ N
Sbjct: 170 SFQP-PSAAAPATSLPSDYNPPPPPPPPPAVEDQAADAN 207


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 291 FRVRYPLETVERLARWTVH 235
           FR    LET+E L  W +H
Sbjct: 208 FRENVALETLEDLLHWMIH 226


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,457,254
Number of Sequences: 5004
Number of extensions: 26628
Number of successful extensions: 71
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)