Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J17
         (379 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0219 - 28474661-28475146,28475979-28476644                       29   1.2  
11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679           29   1.6  
01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871           29   1.6  
04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412     27   3.7  
10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018     27   6.5  
08_02_0734 - 20559249-20559868,20560812-20562132                       27   6.5  
08_01_0048 + 335868-336682,338382-340386                               27   6.5  
02_01_0506 - 3677786-3677972,3678731-3679884                           26   8.6  
01_06_1198 + 35341375-35341635,35341750-35341953,35342151-353427...    26   8.6  
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892...    26   8.6  

>05_07_0219 - 28474661-28475146,28475979-28476644
          Length = 383

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
 Frame = +1

Query: 160 DDLRGGRMTEAPIVTVEQGQLQGKVVNSPSGKAFYSFQGIPYAKPPLGSLRFRAPQPPEP 339
           DD   G    A  +T E  QL+   + + +     SF   P   PP  S     P PP P
Sbjct: 34  DDTEEGAKRRAEEITEELAQLEKTRMTTWARSVVESFDTAPPPSPPPLSATTPHPPPPSP 93

Query: 340 -WEGIRDATA 366
                R ATA
Sbjct: 94  ATSSSRTATA 103


>11_02_0136 + 8698577-8699400,8699525-8700360,8700520-8701679
          Length = 939

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 274 GIPYAKPPLGSLRFRAPQPPEPWEGIRDATAEGN 375
           G+P A   + SL    PQ  E WE  RD+  E +
Sbjct: 382 GLPLAIITMASLLVNKPQTKEQWEKYRDSIVEND 415


>01_01_1044 + 8231933-8231941,8232091-8232166,8232423-8232871
          Length = 177

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -1

Query: 286 RTVSPGNCRTPCPMDCSPLYPEAGPAP 206
           R + P  C  PCP+ C P  P   P P
Sbjct: 127 RGICPPPCPPPCPLPCPPPCPLPCPPP 153


>04_03_0805 - 19850355-19850817,19851146-19851227,19852403-19852412
          Length = 184

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 271 GNCRTPCPMDCSPLYPEAGPAP 206
           G C TP   DC P  P   PAP
Sbjct: 120 GGCATPHCCDCHPKPPPPAPAP 141


>10_06_0165 + 11380807-11383585,11383628-11383734,11383782-11384018
          Length = 1040

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 285  VRYPLETVERLARWTVHHFTLKLALLHCHYRCL 187
            V Y L+ +E++ ++   H  +  AL++C  RCL
Sbjct: 931  VAYALQNMEKVVKFL--HTVMSTALVYCSLRCL 961


>08_02_0734 - 20559249-20559868,20560812-20562132
          Length = 646

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 15/42 (35%), Positives = 18/42 (42%)
 Frame = +1

Query: 214 GQLQGKVVNSPSGKAFYSFQGIPYAKPPLGSLRFRAPQPPEP 339
           GQL G V  S +G    +F G      PL      +P PP P
Sbjct: 202 GQLGGAVPASLAGMPASAFLGTSLCGAPLAPCANPSPTPPSP 243


>08_01_0048 + 335868-336682,338382-340386
          Length = 939

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 274 GIPYAKPPLGSLRFRAPQPPEPWEGIRDA 360
           G+P A   +GSL    P+  E W+ IRD+
Sbjct: 365 GLPLAIVTVGSLLACRPRTMEEWKSIRDS 393


>02_01_0506 - 3677786-3677972,3678731-3679884
          Length = 446

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +1

Query: 286 AKPPLGSLRFRAPQPPEPWEGIR 354
           A+  +G   F AP PP  ++G+R
Sbjct: 322 ARSAMGGFEFLAPPPPNYYDGVR 344


>01_06_1198 +
           35341375-35341635,35341750-35341953,35342151-35342737,
           35342825-35342986,35343096-35343549
          Length = 555

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = +1

Query: 193 PIVTVEQGQLQGKVVNSPSGKAFYSFQGIPYAKPPLGSLRFRAPQPPEP 339
           P V   Q   QG      +  + +SFQ  P ++  + +  F+ P PP P
Sbjct: 106 PEVAAAQSADQGGKDEQRNSYSDFSFQTAPASEEAVRTTTFQPPVPPAP 154


>01_06_0565 +
           30287253-30287502,30287522-30289010,30289133-30289277,
           30289679-30289729
          Length = 644

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -1

Query: 289 SRTVSPGNCRTPCPMDCSPLYPEAGPAP 206
           SRT +PG C TP P    P  P +G +P
Sbjct: 295 SRT-TPGGCSTPTPCGTPPA-PSSGTSP 320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,446,511
Number of Sequences: 37544
Number of extensions: 218058
Number of successful extensions: 687
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)