Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J16
         (379 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   6.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   6.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   6.4  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   8.4  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   8.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    20   8.4  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 4.8
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +1

Query: 121 NTYWKDESFA 150
           N YWKDE  A
Sbjct: 89  NQYWKDERLA 98


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 151 RGFSVDGYQSDGAEDGEVGRSPK 219
           +GF +DGY ++   D +V ++ K
Sbjct: 204 KGFHMDGYTNNSKWDFKVIKATK 226


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 251 GKPTEKQLRELEHVRNLSK 307
           GKP E  L ++ HV+   K
Sbjct: 410 GKPAEGMLTDVFHVQETDK 428



 Score = 20.2 bits (40), Expect = 8.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 206 PTSPSSAPSDWYPSTENPLAND 141
           P SP+    D  P+ E PL  +
Sbjct: 490 PASPAYVHEDVSPTFEKPLVRE 511


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 356 RPNAPSSPAHVNCPAAPCSS 297
           +P+ P+S +  + P + CSS
Sbjct: 588 KPDKPASSSASSAPTSVCSS 607


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 138 IFPICVSCF 112
           +FP+C  CF
Sbjct: 411 VFPVCFVCF 419


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 138 IFPICVSCF 112
           +FP+C  CF
Sbjct: 411 VFPVCFVCF 419


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 5/9 (55%), Positives = 7/9 (77%)
 Frame = -2

Query: 138 IFPICVSCF 112
           +FP+C  CF
Sbjct: 349 VFPVCFVCF 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,429
Number of Sequences: 438
Number of extensions: 1497
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)