Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0021_J15
         (270 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p...    77   4e-16
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|...    26   1.1  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   1.4  
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa...    25   1.4  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   1.4  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    25   2.5  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    23   9.9  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    23   9.9  

>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 340

 Score = 77.0 bits (181), Expect = 4e-16
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
 Frame = +2

Query: 26  TSRMETNKVVCYAHPDAP-LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSN-EKSGV 199
           TS +    +      D P L+E++ +GD +C  CGLV+GDR+ID  SEWRTFSN +++  
Sbjct: 11  TSMLSVKMICSECREDPPNLVEEFSSGDTVCGSCGLVLGDRIIDTRSEWRTFSNSDEASG 70

Query: 200 DPFCVGGPENPL*SGGDLSTII 265
           DP  VG   NPL +G  L T I
Sbjct: 71  DPSRVGKVANPLLNGSQLDTTI 92


>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 234 NGFSGPPTQKGSTPDFS 184
           NG +GP T K STP+ S
Sbjct: 290 NGLAGPETSKTSTPNMS 306


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 220 STYTKRINTRFFIAE 176
           STYTK+IN +FF  E
Sbjct: 191 STYTKKINVKFFEKE 205


>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
           Arp9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 523

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -3

Query: 223 WSTYTKRINTRFFIAEC 173
           WS Y + + T+FF  EC
Sbjct: 157 WSLYDRELATQFFFEEC 173


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -3

Query: 220 STYTKRINTRFFIAE 176
           STYTK+IN +FF  E
Sbjct: 191 STYTKKINVKFFEKE 205


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.6 bits (51), Expect = 2.5
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = -3

Query: 151 NNSITNYQSAF*TYHVTSSVILN 83
           N +I+NY S+  +Y+  SS+I+N
Sbjct: 147 NTAISNYVSSGLSYYGNSSIIMN 169


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 1/19 (5%)
 Frame = +2

Query: 155 VGSEWRTFSN-EKSGVDPF 208
           VG  W++FSN EK  V  F
Sbjct: 81  VGMNWKSFSNKEKESVTSF 99


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +2

Query: 65  HPDAPLIEDYRAGDMICSEC 124
           HPD P  E    G+ +  EC
Sbjct: 26  HPDIPFAESIDEGETVKIEC 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,125,022
Number of Sequences: 5004
Number of extensions: 19486
Number of successful extensions: 42
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 57602552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)