Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0021_J15
(270 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0078 + 20727684-20728036,20728871-20728895,20729218-207293... 77 2e-15
03_02_0002 + 4853886-4854812 63 3e-11
05_07_0002 - 26979873-26980823 49 4e-07
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 29 0.67
07_03_0520 + 19014731-19015795 29 0.67
10_06_0020 - 9693126-9693437,9694940-9695368 28 0.89
07_01_0986 - 8314733-8314783,8315895-8318381 27 1.6
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 27 1.6
05_06_0161 + 26078019-26078510 27 2.1
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 27 2.1
03_05_0675 + 26630466-26632070 26 3.6
05_05_0075 + 22209322-22210041,22210323-22210391,22210775-222111... 26 4.7
12_02_0338 - 17712076-17712261,17712339-17712431,17712533-177125... 25 6.3
10_08_0643 + 19541991-19542188,19543261-19543515,19543598-195437... 25 6.3
10_02_0115 + 5445580-5445606,5446118-5446609 25 8.3
07_03_1173 - 24526632-24526755,24527057-24527226,24527441-245275... 25 8.3
06_03_0924 - 25976629-25976979,25977471-25978424,25978512-259785... 25 8.3
02_01_0069 + 491452-492594 25 8.3
01_06_1113 + 34613668-34614075,34614781-34614970,34615264-346153... 25 8.3
>09_06_0078 +
20727684-20728036,20728871-20728895,20729218-20729347,
20729441-20729571,20729654-20729742,20730127-20730203,
20730279-20730412
Length = 312
Score = 77.0 bits (181), Expect = 2e-15
Identities = 36/70 (51%), Positives = 45/70 (64%)
Frame = +2
Query: 56 CYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPFCVGGPENPL 235
C H + D+ AGD +C+ECGLV+ +D SEWRTF+NE S DP VGGP NPL
Sbjct: 9 CKKHTEVAF--DHSAGDTVCTECGLVLEAHSVDETSEWRTFANESSDNDPVRVGGPTNPL 66
Query: 236 *SGGDLSTII 265
+ G LST+I
Sbjct: 67 LTDGGLSTVI 76
>03_02_0002 + 4853886-4854812
Length = 308
Score = 63.3 bits (147), Expect = 3e-11
Identities = 33/75 (44%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Frame = +2
Query: 56 CYA---HPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGV--DPFCVGG 220
CY H ++ D+ GD IC+EC LV+ +R ID SEWRTFS+ SG DP VGG
Sbjct: 10 CYCPECHRTTVVVVDHATGDTICTECALVLEERYIDETSEWRTFSDAGSGEDRDPNRVGG 69
Query: 221 PENPL*SGGDLSTII 265
+P S +L T++
Sbjct: 70 CSDPFLSHAELGTVV 84
>05_07_0002 - 26979873-26980823
Length = 316
Score = 49.2 bits (112), Expect = 4e-07
Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Frame = +2
Query: 80 LIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNE--KSGVDPFCVGGPENP 232
++ D+ GD IC+EC LV+ R ID SEWRTF+N+ DP VG +P
Sbjct: 21 VVLDHTTGDTICTECALVLDARYIDETSEWRTFANDGASDDRDPNRVGDRADP 73
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 28.7 bits (61), Expect = 0.67
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +2
Query: 26 TSRMETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDP 205
TS + K + + D + ED +C ECGLVV +W+ S +++ V+
Sbjct: 149 TSEVNNKKQLDNCNHDIHVYEDL---GHVCHECGLVVRKADSLFHYQWKKASRKRTNVNE 205
Query: 206 FCV 214
C+
Sbjct: 206 VCL 208
>07_03_0520 + 19014731-19015795
Length = 354
Score = 28.7 bits (61), Expect = 0.67
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +2
Query: 80 LIEDYRAGDMICSECGLVVGD 142
++ D+ GD IC+EC +V+G+
Sbjct: 20 MVLDHDTGDAICTECAIVLGN 40
>10_06_0020 - 9693126-9693437,9694940-9695368
Length = 246
Score = 28.3 bits (60), Expect = 0.89
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = +3
Query: 6 ARGSWRARRE----WRLTRWCATR 65
ARGSWR RR W +WC+ R
Sbjct: 108 ARGSWRRRRRSCSWWSSQQWCSRR 131
>07_01_0986 - 8314733-8314783,8315895-8318381
Length = 845
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -1
Query: 267 PMIVERSP-PDHNGFSGPPTQKGSTPDFSLLNVL 169
P+ + R+P P H S PP+Q S+P LL +L
Sbjct: 18 PLSILRTPTPRHLSSSSPPSQPPSSPAGELLRLL 51
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 65 HPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWR 172
HPD P +ED + G + G+ + D+GSE R
Sbjct: 537 HPDDPFVEDDQHGSV--RSIGVGISSDAADIGSEVR 570
>05_06_0161 + 26078019-26078510
Length = 163
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 76 CVWMRVAHHLVSLHSRRARHDPRAE 2
C R A L SLHS RH PR E
Sbjct: 53 CAHHRAAAGLPSLHSHPRRHGPRPE 77
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +2
Query: 98 AGDMICSECGLVVGDRVIDVGSEWRTFSN 184
AGD + CGL +G V VGS R +N
Sbjct: 144 AGDALALPCGLGLGSHVTVVGSPRRVAAN 172
>03_05_0675 + 26630466-26632070
Length = 534
Score = 26.2 bits (55), Expect = 3.6
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 38 ETNKVVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEWRTFSNEKSGVDPFCVG 217
+T + +CY H + D +AG+++ G V ++ D G + S F
Sbjct: 135 DTLRALCYLHEQGRIHRDIKAGNILVDSDGSV---KLADFGVSASIYETAPSTSSAF--S 189
Query: 218 GPEN--PL*SGGDLST 259
GP N P SG LS+
Sbjct: 190 GPINHAPPPSGAALSS 205
>05_05_0075 +
22209322-22210041,22210323-22210391,22210775-22211145,
22212291-22212351,22212496-22213086
Length = 603
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = -1
Query: 252 RSPPDHNGFSGPPTQKGSTP 193
R PPDH S PP GS P
Sbjct: 49 RFPPDHPAESPPPPPPGSWP 68
>12_02_0338 -
17712076-17712261,17712339-17712431,17712533-17712593,
17712681-17712791,17712872-17713123,17713207-17714543,
17714649-17715317,17715403-17715642
Length = 982
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/40 (25%), Positives = 19/40 (47%)
Frame = +2
Query: 50 VVCYAHPDAPLIEDYRAGDMICSECGLVVGDRVIDVGSEW 169
VV + P L+ A S+CG++V +++ +W
Sbjct: 136 VVTHVSPKGELLTPKTARTKFSSQCGIIVREKISITVKDW 175
>10_08_0643 +
19541991-19542188,19543261-19543515,19543598-19543722,
19543815-19543859,19544618-19544699,19545099-19545167,
19545276-19545446,19545530-19545595,19546236-19546273,
19547478-19547759,19548286-19548419,19548887-19548981,
19549083-19549127,19549250-19549309,19549483-19549584,
19549852-19549903,19549982-19550034,19550138-19550202,
19550579-19550630,19550780-19550857
Length = 688
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 38 ETNKVVCYAHPDAPLIEDYRAGDMICSECGLV-VGD 142
ET K + Y H + D +AG+++ G+V +GD
Sbjct: 132 ETLKALEYLHRQGQIHRDVKAGNILVDNAGIVKLGD 167
>10_02_0115 + 5445580-5445606,5446118-5446609
Length = 172
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 15 SWRARREWRLTRWCA 59
+WR RR WR+ RW A
Sbjct: 29 AWRRRRRWRI-RWSA 42
>07_03_1173 -
24526632-24526755,24527057-24527226,24527441-24527506,
24527858-24527953,24528340-24528438,24528730-24528819,
24529016-24529111,24529561-24529654,24530254-24530351,
24530395-24530679
Length = 405
Score = 25.0 bits (52), Expect = 8.3
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +2
Query: 68 PDAPLIEDYRAGDMICSECGLVVGDRVID-VGSEWRTFSNEKSGVDPFCVGGPENPL*SG 244
PDA L + G + E V V+D +G+E R E+ P VGG NP+ G
Sbjct: 315 PDAILRQVRECGHIPHVEKPSEVLKHVLDFLGTERRPEKAEQGSSLPSTVGGDNNPVGGG 374
Query: 245 GD 250
+
Sbjct: 375 SE 376
>06_03_0924 - 25976629-25976979,25977471-25978424,25978512-25978565,
25979135-25979254,25979357-25979532,25979624-25980107,
25980541-25980744,25981671-25981877,25982179-25982271,
25982433-25982621,25983364-25983423,25983591-25983927,
25984195-25984432,25984614-25984816,25985549-25986554,
25987125-25987290,25987715-25987824,25987944-25988195,
25988360-25988402,25988488-25988550,25989512-25989624,
25990787-25990838
Length = 1824
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 255 ERSPPDHNGFSGPPTQKGSTPD 190
+R D NGFSG P Q S+ D
Sbjct: 1578 KRDREDDNGFSGQPIQINSSHD 1599
>02_01_0069 + 491452-492594
Length = 380
Score = 25.0 bits (52), Expect = 8.3
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = +3
Query: 12 GSWRARREWRL 44
G WRAR EWR+
Sbjct: 222 GEWRARGEWRM 232
>01_06_1113 +
34613668-34614075,34614781-34614970,34615264-34615372,
34615822-34615912,34615948-34616076,34616306-34616804,
34617154-34617251
Length = 507
Score = 25.0 bits (52), Expect = 8.3
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 209 KKDQHQIFHC*MFSILNQHQ*LYHQLPVRILNISCHQL 96
K+D+H++ H F +LN Y P+ ++ +Q+
Sbjct: 408 KRDRHRLLHTFKFMVLNNFFSDYPDKPLEFPSVKVNQI 445
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,700,316
Number of Sequences: 37544
Number of extensions: 139872
Number of successful extensions: 454
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 68
effective length of database: 12,240,356
effective search space used: 257047476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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